(28 nodes) Nuclear speck network (Nematostella vectensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	v1g138221	Predicted protein. (145 aa)
	v1g224671	Predicted protein. (109 aa)
	v1g223056	Predicted protein. (139 aa)
	v1g239809	Predicted protein. (389 aa)
	v1g160815	Predicted protein. (478 aa)
	v1g239362	Predicted protein. (387 aa)
	v1g197434	Predicted protein. (229 aa)
	v1g238362	Predicted protein; Belongs to the G-protein coupled receptor 1 family. (460 aa)
	v1g80581	Predicted protein. (124 aa)
	v1g238029	Predicted protein. (721 aa)
	v1g202761	Predicted protein. (223 aa)
	v1g95177	Predicted protein. (180 aa)
	v1g241701	Predicted protein. (513 aa)
	v1g205670	Predicted protein. (724 aa)
	v1g101837	Predicted protein. (177 aa)
	v1g185519	Predicted protein. (513 aa)
	v1g243314	Predicted protein. (346 aa)
	v1g108573	Predicted protein. (127 aa)
	v1g108628	Predicted protein. (256 aa)
	v1g17350	Predicted protein. (137 aa)
	v1g214142	Predicted protein. (809 aa)
	v1g246147	Predicted protein. (263 aa)
	v1g173044	Nucleolar complex protein 3 homolog. (624 aa)
	v1g129266	DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family. (257 aa)
	v1g133031	Predicted protein. (659 aa)
	v1g12306	Predicted protein. (438 aa)
	v1g218275	Predicted protein. (525 aa)
	v1g231007	Predicted protein. (118 aa)

Your Current Organism:

Nematostella vectensis

NCBI taxonomy Id: 45351
Other names: N. vectensis, starlet sea anemone

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
v1g101837	v1g108573	A7S2H6	A7S877	Predicted protein.	Predicted protein.	0.548
v1g101837	v1g80581	A7S2H6	A7RGB7	Predicted protein.	Predicted protein.	0.732
v1g108573	v1g101837	A7S877	A7S2H6	Predicted protein.	Predicted protein.	0.548
v1g108573	v1g202761	A7S877	A7RVI6	Predicted protein.	Predicted protein.	0.982
v1g108573	v1g205670	A7S877	A7S2A3	Predicted protein.	Predicted protein.	0.667
v1g108573	v1g243314	A7S877	A7S745	Predicted protein.	Predicted protein.	0.708
v1g108628	v1g17350	A7S8E0	A7S9W8	Predicted protein.	Predicted protein.	0.573
v1g108628	v1g223056	A7S8E0	A7T6L4	Predicted protein.	Predicted protein.	0.573
v1g129266	v1g173044	A7SRZ2	A7SQ05	DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family.	Nucleolar complex protein 3 homolog.	0.414
v1g129266	v1g243314	A7SRZ2	A7S745	DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family.	Predicted protein.	0.437
v1g173044	v1g129266	A7SQ05	A7SRZ2	Nucleolar complex protein 3 homolog.	DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family.	0.414
v1g173044	v1g246147	A7SQ05	A7SM58	Nucleolar complex protein 3 homolog.	Predicted protein.	0.455
v1g17350	v1g108628	A7S9W8	A7S8E0	Predicted protein.	Predicted protein.	0.573
v1g17350	v1g202761	A7S9W8	A7RVI6	Predicted protein.	Predicted protein.	0.507
v1g185519	v1g241701	A7S4D0	A7RZ49	Predicted protein.	Predicted protein.	0.534
v1g185519	v1g243314	A7S4D0	A7S745	Predicted protein.	Predicted protein.	0.561
v1g202761	v1g108573	A7RVI6	A7S877	Predicted protein.	Predicted protein.	0.982
v1g202761	v1g17350	A7RVI6	A7S9W8	Predicted protein.	Predicted protein.	0.507
v1g202761	v1g205670	A7RVI6	A7S2A3	Predicted protein.	Predicted protein.	0.563
v1g202761	v1g223056	A7RVI6	A7T6L4	Predicted protein.	Predicted protein.	0.507