(37 nodes) SCF ubiquitin ligase complex network (Nematostella vectensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	v1g221452	Predicted protein. (1015 aa)
	v1g240625	Predicted protein. (510 aa)
	v1g91173	Predicted protein. (378 aa)
	v1g240172	Predicted protein. (402 aa)
	v1g180887	Predicted protein. (538 aa)
	v1g89162	Predicted protein. (335 aa)
	v1g239446	Predicted protein. (575 aa)
	v1g231898	Predicted protein. (522 aa)
	v1g238632	Predicted protein. (471 aa)
	v1g228088	Predicted protein. (455 aa)
	v1g237879	Predicted protein. (478 aa)
	v1g211690	Predicted protein. (512 aa)
	v1g215872	Predicted protein. (300 aa)
	v1g215881	Predicted protein. (361 aa)
	v1g131160	Predicted protein. (99 aa)
	v1g248561	Predicted protein. (1020 aa)
	v1g92998	Predicted protein. (337 aa)
	v1g222309	Predicted protein. (253 aa)
	v1g2244	Predicted protein. (233 aa)
	v1g222971	Predicted protein. (525 aa)
	v1g152875	Predicted protein. (153 aa)
	v1g224702	Predicted protein. (178 aa)
	v1g189228	Predicted protein; Belongs to the cullin family. (769 aa)
	v1g210610	Predicted protein. (397 aa)
	v1g168894	Predicted protein. (398 aa)
	v1g112784	Predicted protein. (263 aa)
	v1g25951	Predicted protein. (225 aa)
	v1g187015	Predicted protein. (366 aa)
	v1g107367	Predicted protein. (150 aa)
	v1g105774	Predicted protein. (101 aa)
	v1g61251	Predicted protein. (331 aa)
	v1g242905	Predicted protein. (454 aa)
	v1g242822	Predicted protein. (869 aa)
	v1g165143	Predicted protein. (320 aa)
	v1g204950	Predicted protein. (902 aa)
	v1g164893	Predicted protein; Belongs to the SKP1 family. (162 aa)
	v1g241762	Predicted protein. (484 aa)

Your Current Organism:

Nematostella vectensis

NCBI taxonomy Id: 45351
Other names: N. vectensis, starlet sea anemone

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
v1g105774	v1g164893	A7S602	A7S0E4	Predicted protein.	Predicted protein; Belongs to the SKP1 family.	0.978
v1g105774	v1g189228	A7S602	A7SFF7	Predicted protein.	Predicted protein; Belongs to the cullin family.	0.661
v1g105774	v1g228088	A7S602	A7RIJ5	Predicted protein.	Predicted protein.	0.622
v1g107367	v1g164893	A7S7A3	A7S0E4	Predicted protein.	Predicted protein; Belongs to the SKP1 family.	0.695
v1g107367	v1g189228	A7S7A3	A7SFF7	Predicted protein.	Predicted protein; Belongs to the cullin family.	0.528
v1g107367	v1g92998	A7S7A3	A7RTZ4	Predicted protein.	Predicted protein.	0.474
v1g112784	v1g164893	A7SC15	A7S0E4	Predicted protein.	Predicted protein; Belongs to the SKP1 family.	0.939
v1g112784	v1g189228	A7SC15	A7SFF7	Predicted protein.	Predicted protein; Belongs to the cullin family.	0.766
v1g112784	v1g92998	A7SC15	A7RTZ4	Predicted protein.	Predicted protein.	0.421
v1g131160	v1g164893	A7STJ5	A7S0E4	Predicted protein.	Predicted protein; Belongs to the SKP1 family.	0.949
v1g152875	v1g164893	A7TAX9	A7S0E4	Predicted protein.	Predicted protein; Belongs to the SKP1 family.	0.686
v1g164893	v1g105774	A7S0E4	A7S602	Predicted protein; Belongs to the SKP1 family.	Predicted protein.	0.978
v1g164893	v1g107367	A7S0E4	A7S7A3	Predicted protein; Belongs to the SKP1 family.	Predicted protein.	0.695
v1g164893	v1g112784	A7S0E4	A7SC15	Predicted protein; Belongs to the SKP1 family.	Predicted protein.	0.939
v1g164893	v1g131160	A7S0E4	A7STJ5	Predicted protein; Belongs to the SKP1 family.	Predicted protein.	0.949
v1g164893	v1g152875	A7S0E4	A7TAX9	Predicted protein; Belongs to the SKP1 family.	Predicted protein.	0.686
v1g164893	v1g165143	A7S0E4	A7S147	Predicted protein; Belongs to the SKP1 family.	Predicted protein.	0.879
v1g164893	v1g168894	A7S0E4	A7SCB1	Predicted protein; Belongs to the SKP1 family.	Predicted protein.	0.801
v1g164893	v1g180887	A7S0E4	A7RQP2	Predicted protein; Belongs to the SKP1 family.	Predicted protein.	0.946
v1g164893	v1g187015	A7S0E4	A7S8N8	Predicted protein; Belongs to the SKP1 family.	Predicted protein.	0.987