(19 nodes) Synaptic vesicle membrane network (Nematostella vectensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	v1g191466	Predicted protein. (221 aa)
	v1g191557	Predicted protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (718 aa)
	v1g246358	Predicted protein. (161 aa)
	v1g146041	Predicted protein. (105 aa)
	v1g136185	Predicted protein. (357 aa)
	v1g247750	Predicted protein. (300 aa)
	v1g241626	Predicted protein. (250 aa)
	v1g97106	Predicted protein. (273 aa)
	v1g203674	Predicted protein. (169 aa)
	v1g96067	Predicted protein. (178 aa)
	v1g182641	Predicted protein. (257 aa)
	v1g240761	Predicted protein. (291 aa)
	v1g243698	Predicted protein. (206 aa)
	v1g110232	Predicted protein. (357 aa)
	v1g206051	Predicted protein. (296 aa)
	v1g102666	Predicted protein. (114 aa)
	v1g230044	Predicted protein. (412 aa)
	v1g211579	Predicted protein. (281 aa)
	v1g102493	Predicted protein. (161 aa)

Your Current Organism:

Nematostella vectensis

NCBI taxonomy Id: 45351
Other names: N. vectensis, starlet sea anemone

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
v1g102493	v1g191466	A7S354	A7SMW8	Predicted protein.	Predicted protein.	0.681
v1g102493	v1g206051	A7S354	A7S352	Predicted protein.	Predicted protein.	0.896
v1g102493	v1g96067	A7S354	A7RWI0	Predicted protein.	Predicted protein.	0.518
v1g102666	v1g191466	A7S353	A7SMW8	Predicted protein.	Predicted protein.	0.681
v1g102666	v1g96067	A7S353	A7RWI0	Predicted protein.	Predicted protein.	0.518
v1g110232	v1g136185	A7S9R2	A7SX17	Predicted protein.	Predicted protein.	0.890
v1g110232	v1g146041	A7S9R2	A7T4W7	Predicted protein.	Predicted protein.	0.434
v1g110232	v1g182641	A7S9R2	A7RW51	Predicted protein.	Predicted protein.	0.700
v1g110232	v1g191466	A7S9R2	A7SMW8	Predicted protein.	Predicted protein.	0.870
v1g110232	v1g230044	A7S9R2	A7SET6	Predicted protein.	Predicted protein.	0.700
v1g110232	v1g96067	A7S9R2	A7RWI0	Predicted protein.	Predicted protein.	0.783
v1g110232	v1g97106	A7S9R2	A7RXY7	Predicted protein.	Predicted protein.	0.434
v1g136185	v1g110232	A7SX17	A7S9R2	Predicted protein.	Predicted protein.	0.890
v1g136185	v1g182641	A7SX17	A7RW51	Predicted protein.	Predicted protein.	0.792
v1g136185	v1g191466	A7SX17	A7SMW8	Predicted protein.	Predicted protein.	0.918
v1g136185	v1g230044	A7SX17	A7SET6	Predicted protein.	Predicted protein.	0.593
v1g146041	v1g110232	A7T4W7	A7S9R2	Predicted protein.	Predicted protein.	0.434
v1g146041	v1g191466	A7T4W7	A7SMW8	Predicted protein.	Predicted protein.	0.582
v1g182641	v1g110232	A7RW51	A7S9R2	Predicted protein.	Predicted protein.	0.700
v1g182641	v1g136185	A7RW51	A7SX17	Predicted protein.	Predicted protein.	0.792