(21 nodes) Carboxy-terminal domain protein kinase complex network (Nematostella vectensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	v1g236269	Predicted protein; Belongs to the protein kinase superfamily. (347 aa)
	v1g155676	Predicted protein. (109 aa)
	v1g156060	Predicted protein. (101 aa)
	v1g6862	Predicted protein. (83 aa)
	v1g147788	Predicted protein. (281 aa)
	v1g147480	Predicted protein. (93 aa)
	v1g130552	Predicted protein; Belongs to the protein kinase superfamily. (337 aa)
	v1g127715	Predicted protein. (71 aa)
	v1g246363	Predicted protein; Belongs to the protein kinase superfamily. (370 aa)
	v1g245039	Predicted protein. (190 aa)
	v1g244165	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (471 aa)
	v1g167568	Predicted protein; Belongs to the cyclin family. (306 aa)
	v1g101079	General transcription factor IIH subunit. (400 aa)
	v1g99661	Predicted protein; Belongs to the cyclin family. (255 aa)
	v1g96883	Predicted protein. (734 aa)
	v1g241252	Predicted protein. (306 aa)
	v1g228551	Predicted protein. (304 aa)
	v1g200759	Predicted protein. (484 aa)
	v1g89791	Predicted protein. (226 aa)
	v1g83332	Predicted protein; Belongs to the cyclin family. (201 aa)
	v1g238228	Predicted protein. (542 aa)

Your Current Organism:

Nematostella vectensis

NCBI taxonomy Id: 45351
Other names: N. vectensis, starlet sea anemone

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
v1g101079	v1g127715	A7S1M7	A7SQJ6	General transcription factor IIH subunit.	Predicted protein.	0.968
v1g101079	v1g130552	A7S1M7	A7ST16	General transcription factor IIH subunit.	Predicted protein; Belongs to the protein kinase superfamily.	0.883
v1g101079	v1g147480	A7S1M7	A7T657	General transcription factor IIH subunit.	Predicted protein.	0.544
v1g101079	v1g147788	A7S1M7	A7T6F2	General transcription factor IIH subunit.	Predicted protein.	0.719
v1g101079	v1g155676	A7S1M7	A8DVA7	General transcription factor IIH subunit.	Predicted protein.	0.963
v1g101079	v1g156060	A7S1M7	A7TDE0	General transcription factor IIH subunit.	Predicted protein.	0.758
v1g101079	v1g167568	A7S1M7	A7S801	General transcription factor IIH subunit.	Predicted protein; Belongs to the cyclin family.	0.987
v1g101079	v1g228551	A7S1M7	A7RQW1	General transcription factor IIH subunit.	Predicted protein.	0.719
v1g101079	v1g236269	A7S1M7	A7REX1	General transcription factor IIH subunit.	Predicted protein; Belongs to the protein kinase superfamily.	0.758
v1g101079	v1g238228	A7S1M7	A7RH50	General transcription factor IIH subunit.	Predicted protein.	0.989
v1g101079	v1g241252	A7S1M7	A7RWZ3	General transcription factor IIH subunit.	Predicted protein.	0.989
v1g101079	v1g244165	A7S1M7	A7SBP9	General transcription factor IIH subunit.	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.989
v1g101079	v1g245039	A7S1M7	A7SG25	General transcription factor IIH subunit.	Predicted protein.	0.989
v1g101079	v1g6862	A7S1M7	A7TAF2	General transcription factor IIH subunit.	Predicted protein.	0.883
v1g101079	v1g83332	A7S1M7	A7RIW0	General transcription factor IIH subunit.	Predicted protein; Belongs to the cyclin family.	0.820
v1g101079	v1g96883	A7S1M7	A7RXK7	General transcription factor IIH subunit.	Predicted protein.	0.963
v1g101079	v1g99661	A7S1M7	A7S058	General transcription factor IIH subunit.	Predicted protein; Belongs to the cyclin family.	0.726
v1g127715	v1g101079	A7SQJ6	A7S1M7	Predicted protein.	General transcription factor IIH subunit.	0.968
v1g127715	v1g130552	A7SQJ6	A7ST16	Predicted protein.	Predicted protein; Belongs to the protein kinase superfamily.	0.860
v1g127715	v1g147480	A7SQJ6	A7T657	Predicted protein.	Predicted protein.	0.968