(26 nodes) Set1C/COMPASS complex network (Nematostella vectensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	v1g239206	Predicted protein. (373 aa)
	v1g81567	Predicted protein. (622 aa)
	v1g209661	Predicted protein. (983 aa)
	v1g168887	Predicted protein. (716 aa)
	v1g31888	Predicted protein. (410 aa)
	v1g163356	Predicted protein. (995 aa)
	v1g79914	Predicted protein. (396 aa)
	v1g37191	Predicted protein. (196 aa)
	v1g207760	Predicted protein. (314 aa)
	v1g94595	Predicted protein. (213 aa)
	v1g39792	Predicted protein. (90 aa)
	v1g94209	Predicted protein. (273 aa)
	v1g245210	Predicted protein. (623 aa)
	v1g173444	Predicted protein. (115 aa)
	v1g237480	Predicted protein. (354 aa)
	v1g10765	Predicted protein. (519 aa)
	v1g2636	Predicted protein. (211 aa)
	v1g142974	Predicted protein. (218 aa)
	v1g221447	Predicted protein. (276 aa)
	v1g221552	Predicted protein. (318 aa)
	v1g221755	Predicted protein. (168 aa)
	v1g17091	Predicted protein. (119 aa)
	v1g223210	Predicted protein. (220 aa)
	v1g223944	Predicted protein. (318 aa)
	v1g92230	Predicted protein. (76 aa)
	v1g239717	Predicted protein. (114 aa)

Your Current Organism:

Nematostella vectensis

NCBI taxonomy Id: 45351
Other names: N. vectensis, starlet sea anemone

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
v1g10765	v1g17091	A7SU49	A7T5C8	Predicted protein.	Predicted protein.	0.543
v1g10765	v1g207760	A7SU49	A7S6W9	Predicted protein.	Predicted protein.	0.974
v1g10765	v1g209661	A7SU49	A7SBD6	Predicted protein.	Predicted protein.	0.540
v1g10765	v1g237480	A7SU49	A7SSL6	Predicted protein.	Predicted protein.	0.805
v1g10765	v1g239206	A7SU49	A7RLU2	Predicted protein.	Predicted protein.	0.540
v1g10765	v1g239717	A7SU49	A7RP67	Predicted protein.	Predicted protein.	0.960
v1g10765	v1g31888	A7SU49	A7RYD1	Predicted protein.	Predicted protein.	0.974
v1g10765	v1g39792	A7SU49	A7RVC1	Predicted protein.	Predicted protein.	0.927
v1g10765	v1g92230	A7SU49	A7RSS0	Predicted protein.	Predicted protein.	0.549
v1g10765	v1g94209	A7SU49	A7RUR9	Predicted protein.	Predicted protein.	0.594
v1g10765	v1g94595	A7SU49	A7RVC2	Predicted protein.	Predicted protein.	0.927
v1g142974	v1g2636	A7T2C9	A7SZA2	Predicted protein.	Predicted protein.	0.810
v1g17091	v1g10765	A7T5C8	A7SU49	Predicted protein.	Predicted protein.	0.543
v1g17091	v1g207760	A7T5C8	A7S6W9	Predicted protein.	Predicted protein.	0.974
v1g17091	v1g209661	A7T5C8	A7SBD6	Predicted protein.	Predicted protein.	0.540
v1g17091	v1g237480	A7T5C8	A7SSL6	Predicted protein.	Predicted protein.	0.805
v1g17091	v1g239206	A7T5C8	A7RLU2	Predicted protein.	Predicted protein.	0.540
v1g17091	v1g239717	A7T5C8	A7RP67	Predicted protein.	Predicted protein.	0.960
v1g17091	v1g31888	A7T5C8	A7RYD1	Predicted protein.	Predicted protein.	0.974
v1g17091	v1g39792	A7T5C8	A7RVC1	Predicted protein.	Predicted protein.	0.927