(76 nodes) Chromosomal region network (Nematostella vectensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	v1g168133	Predicted protein. (182 aa)
	v1g238213	Predicted protein. (533 aa)
	v1g158808	Predicted protein. (206 aa)
	v1g83438	Predicted protein. (238 aa)
	v1g197820	Predicted protein. (974 aa)
	v1g179224	Predicted protein. (487 aa)
	v1g239321	Predicted protein. (631 aa)
	v1g199543	Predicted protein. (336 aa)
	v1g199634	Predicted protein. (728 aa)
	v1g161221	Predicted protein. (911 aa)
	v1g200332	Predicted protein. (351 aa)
	v1g89355	Predicted protein. (300 aa)
	v1g39421	Predicted protein. (112 aa)
	v1g201065	Predicted protein. (386 aa)
	v1g240339	Predicted protein. (161 aa)
	v1g240366	Predicted protein. (244 aa)
	v1g236593	Predicted protein. (226 aa)
	v1g202033	Predicted protein. (411 aa)
	v1g202603	Predicted protein. (199 aa)
	v1g94894	Predicted protein. (814 aa)
	v1g241026	Predicted protein. (1527 aa)
	v1g241050	Predicted protein. (649 aa)
	v1g203288	Predicted protein. (440 aa)
	v1g236726	Predicted protein. (235 aa)
	v1g241565	Predicted protein. (693 aa)
	v1g183698	Predicted protein. (1987 aa)
	v1g99015	Predicted protein. (338 aa)
	v1g241785	Predicted protein. (606 aa)
	v1g204542	Predicted protein. (822 aa)
	v1g204547	Predicted protein. (1439 aa)
	v1g101837	Predicted protein. (177 aa)
	v1g242688	Predicted protein. (215 aa)
	v1g243216	Predicted protein. (581 aa)
	v1g108011	Predicted protein. (261 aa)
	v1g167848	Predicted protein. (136 aa)
	v1g208781	Predicted protein. (539 aa)
	v1g112689	Predicted protein. (120 aa)
	v1g210037	Predicted protein. (139 aa)
	v1g244257	Predicted protein. (679 aa)
	v1g210463	Predicted protein. (661 aa)
	v1g189188	Predicted protein. (470 aa)
	v1g116843	Predicted protein. (286 aa)
	v1g57220	Predicted protein. (96 aa)
	v1g245107	Predicted protein. (396 aa)
	v1g53017	Predicted protein. (245 aa)
	v1g245642	Predicted protein. (279 aa)
	v1g120818	Predicted protein. (173 aa)
	v1g213521	Predicted protein. (135 aa)
	v1g246128	Predicted protein. (222 aa)
	v1g246452	Predicted protein. (728 aa)
	v1g246872	Predicted protein. (1520 aa)
	v1g246928	Predicted protein. (666 aa)
	v1g129031	Predicted protein. (178 aa)
	v1g247122	Predicted protein. (817 aa)
	v1g130169	Predicted protein. (181 aa)
	v1g216953	Predicted protein. (812 aa)
	v1g247216	Predicted protein. (191 aa)
	v1g247481	Predicted protein. (141 aa)
	v1g174598	Predicted protein. (714 aa)
	v1g31928	Predicted protein. (276 aa)
	v1g1390	Predicted protein. (231 aa)
	v1g134914	Predicted protein. (406 aa)
	v1g218550	Predicted protein. (244 aa)
	v1g218786	Predicted protein. (103 aa)
	v1g218820	Predicted protein. (304 aa)
	v1g175874	Predicted protein. (260 aa)
	v1g175935	Predicted protein. (615 aa)
	v1g248492	Predicted protein. (180 aa)
	v1g147690	Predicted protein. (293 aa)
	v1g148546	Predicted protein. (136 aa)
	v1g47548	Predicted protein. (96 aa)
	v1g224186	Predicted protein. (123 aa)
	v1g55316	Predicted protein. (148 aa)
	v1g19953	Predicted protein. (52 aa)
	v1g225231	Predicted protein. (167 aa)
	v1g225298	Predicted protein. (131 aa)

Your Current Organism:

Nematostella vectensis

NCBI taxonomy Id: 45351
Other names: N. vectensis, starlet sea anemone

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
v1g112689	v1g116843	A7SBX7	A7SFU9	Predicted protein.	Predicted protein.	0.528
v1g112689	v1g148546	A7SBX7	A7T745	Predicted protein.	Predicted protein.	0.681
v1g112689	v1g175874	A7SBX7	A7SZW1	Predicted protein.	Predicted protein.	0.649
v1g112689	v1g200332	A7SBX7	A7RPW6	Predicted protein.	Predicted protein.	0.612
v1g112689	v1g203288	A7SBX7	A7RWQ1	Predicted protein.	Predicted protein.	0.723
v1g112689	v1g210037	A7SBX7	A7SC79	Predicted protein.	Predicted protein.	0.745
v1g112689	v1g224186	A7SBX7	A7T9J1	Predicted protein.	Predicted protein.	0.480
v1g112689	v1g236726	A7SBX7	A7RXM6	Predicted protein.	Predicted protein.	0.480
v1g112689	v1g241565	A7SBX7	A7RYH4	Predicted protein.	Predicted protein.	0.556
v1g112689	v1g241785	A7SBX7	A7RZK9	Predicted protein.	Predicted protein.	0.540
v1g112689	v1g244257	A7SBX7	A7SC81	Predicted protein.	Predicted protein.	0.745
v1g112689	v1g245107	A7SBX7	A7SGF2	Predicted protein.	Predicted protein.	0.904
v1g112689	v1g245642	A7SBX7	A7SJD7	Predicted protein.	Predicted protein.	0.503
v1g112689	v1g246872	A7SBX7	A7SR58	Predicted protein.	Predicted protein.	0.500
v1g112689	v1g246928	A7SBX7	A7SRF7	Predicted protein.	Predicted protein.	0.760
v1g112689	v1g247122	A7SBX7	A7SSG2	Predicted protein.	Predicted protein.	0.648
v1g112689	v1g247216	A7SBX7	A7SSW9	Predicted protein.	Predicted protein.	0.655
v1g112689	v1g247481	A7SBX7	A7SUG7	Predicted protein.	Predicted protein.	0.562
v1g112689	v1g39421	A7SBX7	A7RQV0	Predicted protein.	Predicted protein.	0.405
v1g112689	v1g83438	A7SBX7	A7RIT6	Predicted protein.	Predicted protein.	0.681