(24 nodes) Histone H3/CENP-A network (Nematostella vectensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	v1g48395	Predicted protein. (55 aa)
	v1g159483	Predicted protein. (136 aa)
	v1g104848	Histone H3; Belongs to the histone H3 family. (136 aa)
	v1g229551	Predicted protein. (220 aa)
	v1g230009	Predicted protein. (138 aa)
	v1g230236	Predicted protein. (124 aa)
	v1g118903	Predicted protein. (120 aa)
	v1g227545	Predicted protein. (136 aa)
	v1g175104	Predicted protein. (148 aa)
	v1g135702	Predicted protein. (57 aa)
	v1g194445	Histone H3; Belongs to the histone H3 family. (136 aa)
	v1g141878	Predicted protein. (62 aa)
	v1g220974	Predicted protein. (229 aa)
	v1g148952	Histone H3; Belongs to the histone H3 family. (140 aa)
	v1g150025	Predicted protein. (50 aa)
	v1g231526	Histone H3; Belongs to the histone H3 family. (148 aa)
	v1g152385	Predicted protein. (76 aa)
	v1g227757	Histone H3; Belongs to the histone H3 family. (136 aa)
	v1g224574	Predicted protein; Belongs to the histone H2B family. (235 aa)
	v1g153121	Predicted protein. (90 aa)
	v1g153569	Predicted protein. (49 aa)
	v1g153612	Predicted protein. (93 aa)
	v1g154474	Predicted protein. (93 aa)
	v1g196043	Histone H3; Belongs to the histone H3 family. (136 aa)

Your Current Organism:

Nematostella vectensis

NCBI taxonomy Id: 45351
Other names: N. vectensis, starlet sea anemone

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
v1g135702	v1g224574	A7SWR5	A7TAM8	Predicted protein.	Predicted protein; Belongs to the histone H2B family.	0.539
v1g141878	v1g224574	A7T1L0	A7TAM8	Predicted protein.	Predicted protein; Belongs to the histone H2B family.	0.567
v1g150025	v1g152385	A7T8C4	A7TAG8	Predicted protein.	Predicted protein.	0.428
v1g150025	v1g153121	A7T8C4	A7TB63	Predicted protein.	Predicted protein.	0.441
v1g150025	v1g153612	A7T8C4	A7TBJ4	Predicted protein.	Predicted protein.	0.445
v1g150025	v1g154474	A7T8C4	A7TC67	Predicted protein.	Predicted protein.	0.443
v1g150025	v1g230236	A7T8C4	A7SHQ2	Predicted protein.	Predicted protein.	0.485
v1g152385	v1g150025	A7TAG8	A7T8C4	Predicted protein.	Predicted protein.	0.428
v1g152385	v1g48395	A7TAG8	A7T4U4	Predicted protein.	Predicted protein.	0.434
v1g153121	v1g150025	A7TB63	A7T8C4	Predicted protein.	Predicted protein.	0.441
v1g153121	v1g48395	A7TB63	A7T4U4	Predicted protein.	Predicted protein.	0.447
v1g153569	v1g224574	A7TBH5	A7TAM8	Predicted protein.	Predicted protein; Belongs to the histone H2B family.	0.567
v1g153612	v1g150025	A7TBJ4	A7T8C4	Predicted protein.	Predicted protein.	0.445
v1g153612	v1g48395	A7TBJ4	A7T4U4	Predicted protein.	Predicted protein.	0.451
v1g154474	v1g150025	A7TC67	A7T8C4	Predicted protein.	Predicted protein.	0.443
v1g154474	v1g48395	A7TC67	A7T4U4	Predicted protein.	Predicted protein.	0.449
v1g175104	v1g224574	A7SWR3	A7TAM8	Predicted protein.	Predicted protein; Belongs to the histone H2B family.	0.405
v1g224574	v1g135702	A7TAM8	A7SWR5	Predicted protein; Belongs to the histone H2B family.	Predicted protein.	0.539
v1g224574	v1g141878	A7TAM8	A7T1L0	Predicted protein; Belongs to the histone H2B family.	Predicted protein.	0.567
v1g224574	v1g153569	A7TAM8	A7TBH5	Predicted protein; Belongs to the histone H2B family.	Predicted protein.	0.567