(59 nodes) Calponin homology domain network (Nematostella vectensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	v1g248472	Predicted protein. (983 aa)
	v1g220916	Predicted protein. (125 aa)
	v1g141800	Predicted protein. (198 aa)
	v1g145699	Predicted protein. (366 aa)
	v1g148601	Predicted protein. (154 aa)
	v1g150208	Predicted protein. (95 aa)
	v1g224104	Predicted protein. (184 aa)
	v1g224240	Predicted protein. (162 aa)
	v1g9097	Predicted protein. (82 aa)
	v1g203298	Myophilin-like protein. (196 aa)
	v1g25679	Predicted protein. (125 aa)
	v1g100701	Predicted protein. (66 aa)
	v1g165235	Spectrin beta chain; Belongs to the spectrin family. (2297 aa)
	v1g103725	Predicted protein. (64 aa)
	v1g206855	Predicted protein. (896 aa)
	v1g185829	Predicted protein. (294 aa)
	v1g161196	Transgelin; Belongs to the calponin family. (195 aa)
	v1g200103	Predicted protein. (176 aa)
	v1g239764	Predicted protein. (184 aa)
	v1g200447	Predicted protein. (191 aa)
	v1g200488	Predicted protein. (552 aa)
	v1g240553	Predicted protein. (1542 aa)
	v1g203296	Predicted protein. (167 aa)
	v1g105300	Predicted protein. (549 aa)
	v1g207272	Predicted protein. (315 aa)
	v1g243140	Predicted protein. (264 aa)
	v1g186304	Predicted protein. (121 aa)
	v1g167354	Predicted protein. (656 aa)
	v1g244220	Predicted protein. (135 aa)
	v1g244226	Predicted protein. (721 aa)
	v1g114150	Predicted protein. (621 aa)
	v1g115285	Predicted protein. (52 aa)
	v1g211305	Predicted protein. (3031 aa)
	v1g197268	Predicted protein. (647 aa)
	v1g118436	Predicted protein. (71 aa)
	v1g212323	Predicted protein. (290 aa)
	v1g120663	Predicted protein. (114 aa)
	v1g245940	Predicted protein. (1067 aa)
	v1g125875	Predicted protein. (235 aa)
	v1g246784	Predicted protein. (422 aa)
	v1g130738	Predicted protein. (256 aa)
	v1g193524	Predicted protein. (203 aa)
	v1g116722	Predicted protein. (264 aa)
	v1g197793	Predicted protein. (1678 aa)
	v1g238942	Predicted protein. (1146 aa)
	v1g239614	Predicted protein. (3367 aa)
	v1g88915	Predicted protein. (171 aa)
	v1g131745	Predicted protein. (1506 aa)
	v1g217852	Predicted protein. (595 aa)
	v1g133079	Predicted protein. (106 aa)
	v1g136666	Predicted protein. (376 aa)
	v1g247949	Predicted protein. (308 aa)
	v1g137747	Predicted protein. (901 aa)
	v1g220290	Transgelin; Belongs to the calponin family. (118 aa)
	v1g195118	Transgelin; Belongs to the calponin family. (178 aa)
	v1g220336	Predicted protein. (119 aa)
	v1g141364	Predicted protein. (228 aa)
	v1g196354	Predicted protein. (211 aa)
	v1g238121	Predicted protein. (793 aa)

Your Current Organism:

Nematostella vectensis

NCBI taxonomy Id: 45351
Other names: N. vectensis, starlet sea anemone

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
v1g100701	v1g118436	A7S1B7	A7SHE6	Predicted protein.	Predicted protein.	0.418
v1g100701	v1g141364	A7S1B7	A7T157	Predicted protein.	Predicted protein.	0.408
v1g100701	v1g25679	A7S1B7	A7RWR3	Predicted protein.	Predicted protein.	0.500
v1g116722	v1g118436	A7SFT6	A7SHE6	Predicted protein.	Predicted protein.	0.512
v1g116722	v1g145699	A7SFT6	A7T4L2	Predicted protein.	Predicted protein.	0.620
v1g116722	v1g212323	A7SFT6	A7SHE7	Predicted protein.	Predicted protein.	0.495
v1g116722	v1g224104	A7SFT6	A7T9B1	Predicted protein.	Predicted protein.	0.505
v1g118436	v1g100701	A7SHE6	A7S1B7	Predicted protein.	Predicted protein.	0.418
v1g118436	v1g116722	A7SHE6	A7SFT6	Predicted protein.	Predicted protein.	0.512
v1g118436	v1g197268	A7SHE6	A7RHN8	Predicted protein.	Predicted protein.	0.413
v1g118436	v1g9097	A7SHE6	A7TCK5	Predicted protein.	Predicted protein.	0.403
v1g120663	v1g197268	A7SJI6	A7RHN8	Predicted protein.	Predicted protein.	0.454
v1g120663	v1g203298	A7SJI6	A7RWR1	Predicted protein.	Myophilin-like protein.	0.412
v1g120663	v1g9097	A7SJI6	A7TCK5	Predicted protein.	Predicted protein.	0.430
v1g125875	v1g137747	A7SPA4	A7SYA2	Predicted protein.	Predicted protein.	0.642
v1g125875	v1g196354	A7SPA4	A7RFB4	Predicted protein.	Predicted protein.	0.408
v1g137747	v1g125875	A7SYA2	A7SPA4	Predicted protein.	Predicted protein.	0.642
v1g141364	v1g100701	A7T157	A7S1B7	Predicted protein.	Predicted protein.	0.408
v1g145699	v1g116722	A7T4L2	A7SFT6	Predicted protein.	Predicted protein.	0.620
v1g148601	v1g206855	A7T767	A7S4X0	Predicted protein.	Predicted protein.	0.510