(61 nodes) Zinc finger, PHD-type network (Nematostella vectensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	v1g39881	Predicted protein. (55 aa)
	v1g80159	Predicted protein. (464 aa)
	v1g196845	Predicted protein. (383 aa)
	v1g197064	Predicted protein. (431 aa)
	v1g197241	Predicted protein. (734 aa)
	v1g86153	Predicted protein. (180 aa)
	v1g198875	Predicted protein. (430 aa)
	v1g199093	Predicted protein. (908 aa)
	v1g240231	Predicted protein. (1038 aa)
	v1g162318	Predicted protein. (1438 aa)
	v1g93956	Predicted protein. (155 aa)
	v1g240784	Predicted protein. (386 aa)
	v1g93974	Predicted protein. (519 aa)
	v1g94026	Predicted protein. (317 aa)
	v1g241026	Predicted protein. (1527 aa)
	v1g241179	Predicted protein. (1071 aa)
	v1g36194	Predicted protein. (229 aa)
	v1g232381	Predicted protein. (238 aa)
	v1g96791	Predicted protein. (189 aa)
	v1g232401	Inhibitor of growth protein. (261 aa)
	v1g96987	Predicted protein. (213 aa)
	v1g183768	Predicted protein. (690 aa)
	v1g206508	ATP-dependent DNA helicase; Belongs to the helicase family. (1254 aa)
	v1g229404	Predicted protein. (315 aa)
	v1g242923	Predicted protein. (1064 aa)
	v1g106759	Predicted protein. (69 aa)
	v1g167144	Predicted protein. (813 aa)
	v1g226911	Predicted protein. (776 aa)
	v1g24012	Predicted protein. (273 aa)
	v1g229706	Predicted protein. (824 aa)
	v1g110445	Predicted protein. (446 aa)
	v1g210606	Predicted protein. (494 aa)
	v1g114761	Predicted protein. (61 aa)
	v1g116134	Predicted protein. (74 aa)
	v1g169962	Predicted protein. (265 aa)
	v1g116372	Predicted protein. (251 aa)
	v1g116282	Predicted protein. (463 aa)
	v1g18566	Predicted protein. (94 aa)
	v1g230105	Predicted protein. (180 aa)
	v1g117077	Predicted protein. (57 aa)
	v1g245146	Predicted protein. (606 aa)
	v1g212616	Predicted protein. (364 aa)
	v1g121685	Predicted protein. (199 aa)
	v1g121752	Predicted protein. (50 aa)
	v1g121841	Predicted protein. (318 aa)
	v1g214044	Predicted protein. (876 aa)
	v1g246202	Predicted protein. (579 aa)
	v1g191566	Predicted protein. (1134 aa)
	v1g214816	Predicted protein. (294 aa)
	v1g128202	Predicted protein. (263 aa)
	v1g130437	Predicted protein. (57 aa)
	v1g10765	Predicted protein. (519 aa)
	v1g217754	Predicted protein. (995 aa)
	v1g12321	Predicted protein. (276 aa)
	v1g136105	Predicted protein. (78 aa)
	v1g138493	Predicted protein. (67 aa)
	v1g194978	Predicted protein. (634 aa)
	v1g220426	Predicted protein. (341 aa)
	v1g222471	Predicted protein. (290 aa)
	v1g153107	Predicted protein. (51 aa)
	v1g225175	Predicted protein. (329 aa)

Your Current Organism:

Nematostella vectensis

NCBI taxonomy Id: 45351
Other names: N. vectensis, starlet sea anemone

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
v1g106759	v1g167144	A7S6P9	A7S6Q6	Predicted protein.	Predicted protein.	0.617
v1g106759	v1g232381	A7S6P9	A7RX56	Predicted protein.	Predicted protein.	0.418
v1g106759	v1g24012	A7S6P9	A7S985	Predicted protein.	Predicted protein.	0.496
v1g106759	v1g245146	A7S6P9	A7SGK9	Predicted protein.	Predicted protein.	0.584
v1g110445	v1g191566	A7S9X9	A7SN37	Predicted protein.	Predicted protein.	0.436
v1g116134	v1g116282	A7SF90	A7SFA7	Predicted protein.	Predicted protein.	0.427
v1g116134	v1g116372	A7SF90	A7SFA6	Predicted protein.	Predicted protein.	0.427
v1g116134	v1g169962	A7SF90	A7SFA5	Predicted protein.	Predicted protein.	0.427
v1g116282	v1g116134	A7SFA7	A7SF90	Predicted protein.	Predicted protein.	0.427
v1g116282	v1g116372	A7SFA7	A7SFA6	Predicted protein.	Predicted protein.	0.917
v1g116282	v1g169962	A7SFA7	A7SFA5	Predicted protein.	Predicted protein.	0.900
v1g116282	v1g194978	A7SFA7	A7SZK7	Predicted protein.	Predicted protein.	0.868
v1g116282	v1g198875	A7SFA7	A7RLK2	Predicted protein.	Predicted protein.	0.544
v1g116372	v1g116134	A7SFA6	A7SF90	Predicted protein.	Predicted protein.	0.427
v1g116372	v1g116282	A7SFA6	A7SFA7	Predicted protein.	Predicted protein.	0.917
v1g116372	v1g169962	A7SFA6	A7SFA5	Predicted protein.	Predicted protein.	0.408
v1g116372	v1g194978	A7SFA6	A7SZK7	Predicted protein.	Predicted protein.	0.445
v1g116372	v1g198875	A7SFA6	A7RLK2	Predicted protein.	Predicted protein.	0.445
v1g117077	v1g167144	A7SG37	A7S6Q6	Predicted protein.	Predicted protein.	0.617
v1g117077	v1g232381	A7SG37	A7RX56	Predicted protein.	Predicted protein.	0.418