(122 nodes) Major facilitator superfamily network (Nematostella vectensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	v1g83435	Predicted protein. (140 aa)
	v1g132893	Predicted protein. (374 aa)
	v1g131805	Predicted protein. (282 aa)
	v1g131809	Predicted protein. (136 aa)
	v1g174285	Predicted protein. (396 aa)
	v1g131488	Predicted protein. (432 aa)
	v1g216045	Predicted protein. (502 aa)
	v1g192413	Predicted protein. (443 aa)
	v1g215784	Predicted protein. (397 aa)
	v1g40974	Predicted protein. (442 aa)
	v1g214544	Predicted protein. (494 aa)
	v1g123460	Predicted protein. (344 aa)
	v1g214435	Predicted protein. (470 aa)
	v1g123420	Predicted protein. (423 aa)
	v1g123237	Predicted protein. (418 aa)
	v1g40837	Predicted protein. (328 aa)
	v1g11737	Predicted protein. (400 aa)
	v1g171569	Predicted protein. (487 aa)
	v1g213661	Predicted protein. (387 aa)
	v1g170737	Predicted protein. (383 aa)
	v1g115540	Predicted protein. (344 aa)
	v1g115506	Predicted protein. (327 aa)
	v1g244424	Predicted protein. (856 aa)
	v1g113330	Predicted protein. (369 aa)
	v1g23072	Predicted protein. (333 aa)
	v1g209821	Predicted protein. (495 aa)
	v1g11092	Predicted protein. (425 aa)
	v1g243901	Predicted protein. (537 aa)
	v1g243729	Predicted protein. (566 aa)
	v1g243721	Predicted protein. (490 aa)
	v1g243640	Predicted protein. (327 aa)
	v1g109190	Predicted protein. (357 aa)
	v1g22254	Predicted protein. (402 aa)
	v1g108152	Predicted protein. (321 aa)
	v1g108162	Predicted protein. (380 aa)
	v1g21744	Predicted protein. (425 aa)
	v1g207856	Predicted protein. (336 aa)
	v1g106808	Predicted protein. (320 aa)
	v1g106650	Predicted protein. (110 aa)
	v1g207626	Predicted protein. (335 aa)
	v1g243160	Predicted protein. (551 aa)
	v1g33187	Predicted protein. (376 aa)
	v1g207149	Predicted protein. (450 aa)
	v1g166534	Predicted protein. (431 aa)
	v1g27397	Predicted protein. (200 aa)
	v1g206632	Predicted protein. (153 aa)
	v1g102865	Predicted protein. (294 aa)
	v1g205684	Predicted protein. (458 aa)
	v1g205600	Predicted protein. (570 aa)
	v1g205284	Predicted protein. (267 aa)
	v1g99988	Predicted protein. (438 aa)
	v1g204874	Predicted protein. (271 aa)
	v1g32911	Predicted protein. (356 aa)
	v1g52231	Predicted protein. (371 aa)
	v1g203447	Predicted protein. (420 aa)
	v1g182583	Predicted protein. (504 aa)
	v1g201883	Predicted protein. (454 aa)
	v1g92368	Predicted protein. (403 aa)
	v1g228652	Predicted protein. (491 aa)
	v1g201119	Predicted protein. (450 aa)
	v1g240018	Predicted protein. (497 aa)
	v1g239967	Predicted protein. (491 aa)
	v1g200585	Predicted protein. (457 aa)
	v1g89333	Predicted protein. (365 aa)
	v1g200462	Predicted protein. (489 aa)
	v1g232090	Predicted protein. (442 aa)
	v1g161245	Predicted protein. (420 aa)
	v1g239751	Predicted protein. (491 aa)
	v1g88648	Predicted protein. (375 aa)
	v1g88322	Predicted protein. (384 aa)
	v1g239663	Predicted protein. (509 aa)
	v1g161025	Predicted protein. (469 aa)
	v1g85723	Predicted protein. (435 aa)
	v1g239183	Predicted protein. (481 aa)
	v1g85909	Predicted protein. (361 aa)
	v1g63188	Predicted protein. (140 aa)
	v1g179171	Predicted protein. (302 aa)
	v1g159917	Predicted protein. (446 aa)
	v1g197883	Predicted protein. (467 aa)
	v1g238678	Predicted protein. (454 aa)
	v1g197876	Predicted protein. (610 aa)
	v1g197861	Predicted protein. (447 aa)
	v1g197737	Predicted protein. (509 aa)
	v1g83078	Predicted protein. (149 aa)
	v1g83019	Predicted protein. (282 aa)
	v1g82804	Predicted protein. (429 aa)
	v1g178276	Predicted protein. (302 aa)
	v1g82501	Predicted protein. (456 aa)
	v1g197491	Predicted protein. (481 aa)
	v1g238374	Predicted protein. (515 aa)
	v1g30750	Predicted protein. (424 aa)
	v1g81538	Predicted protein. (424 aa)
	v1g177762	Predicted protein. (470 aa)
	v1g196772	Predicted protein. (502 aa)
	v1g80101	Predicted protein. (445 aa)
	v1g237905	Predicted protein. (502 aa)
	v1g226108	Predicted protein. (249 aa)
	v1g9583	Predicted protein. (112 aa)
	v1g154233	Predicted protein. (247 aa)
	v1g225638	Predicted protein. (217 aa)
	v1g8551	Predicted protein. (77 aa)
	v1g225133	Predicted protein. (209 aa)
	v1g152010	Predicted protein. (187 aa)
	v1g224161	Predicted protein. (211 aa)
	v1g47059	Predicted protein. (129 aa)
	v1g150599	Predicted protein. (217 aa)
	v1g4296	Predicted protein. (155 aa)
	v1g1539	Predicted protein. (307 aa)
	v1g974	Predicted protein. (348 aa)
	v1g61402	Predicted protein. (310 aa)
	v1g222924	Predicted protein. (372 aa)
	v1g147317	Predicted protein. (431 aa)
	v1g796	Predicted protein. (275 aa)
	v1g144566	Predicted protein. (339 aa)
	v1g142306	Predicted protein. (408 aa)
	v1g140505	Predicted protein. (415 aa)
	v1g220201	Predicted protein. (599 aa)
	v1g10128	Predicted protein. (437 aa)
	v1g138860	Predicted protein. (441 aa)
	v1g231086	Predicted protein. (502 aa)
	v1g194407	Predicted protein. (421 aa)
	v1g135421	Predicted protein. (422 aa)

Your Current Organism:

Nematostella vectensis

NCBI taxonomy Id: 45351
Other names: N. vectensis, starlet sea anemone

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Export your current network:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
v1g102865	v1g4296	A7S375	A7T8K7	Predicted protein.	Predicted protein.	0.510
v1g115540	v1g201883	A7SEN8	A7RTF5	Predicted protein.	Predicted protein.	0.500
v1g154233	v1g207856	A8DV36	A7S750	Predicted protein.	Predicted protein.	0.503
v1g161245	v1g177762	A7RPG8	A7RGX9	Predicted protein.	Predicted protein.	0.691
v1g161245	v1g182583	A7RPG8	A7RVZ1	Predicted protein.	Predicted protein.	0.696
v1g161245	v1g243901	A7RPG8	A7SA53	Predicted protein.	Predicted protein.	0.616
v1g177762	v1g161245	A7RGX9	A7RPG8	Predicted protein.	Predicted protein.	0.691
v1g177762	v1g182583	A7RGX9	A7RVZ1	Predicted protein.	Predicted protein.	0.470
v1g177762	v1g243901	A7RGX9	A7SA53	Predicted protein.	Predicted protein.	0.574
v1g178276	v1g4296	A7RIB3	A7T8K7	Predicted protein.	Predicted protein.	0.530
v1g182583	v1g161245	A7RVZ1	A7RPG8	Predicted protein.	Predicted protein.	0.696
v1g182583	v1g177762	A7RVZ1	A7RGX9	Predicted protein.	Predicted protein.	0.470
v1g182583	v1g203447	A7RVZ1	A7RX38	Predicted protein.	Predicted protein.	0.613
v1g182583	v1g243901	A7RVZ1	A7SA53	Predicted protein.	Predicted protein.	0.413
v1g182583	v1g92368	A7RVZ1	A7RT20	Predicted protein.	Predicted protein.	0.613
v1g201883	v1g115540	A7RTF5	A7SEN8	Predicted protein.	Predicted protein.	0.500
v1g203447	v1g182583	A7RX38	A7RVZ1	Predicted protein.	Predicted protein.	0.613
v1g207856	v1g154233	A7S750	A8DV36	Predicted protein.	Predicted protein.	0.503
v1g228652	v1g40974	A7RSS9	A7SQ43	Predicted protein.	Predicted protein.	0.904
v1g243901	v1g161245	A7SA53	A7RPG8	Predicted protein.	Predicted protein.	0.616