(22 nodes) Ribosomal protein S5 domain 2-type fold, subgroup network (Nematostella vectensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	v1g97802	Predicted protein. (594 aa)
	v1g162970	DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks. (516 aa)
	v1g225783	DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks. (281 aa)
	v1g162182	Predicted protein. (831 aa)
	v1g236547	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. (735 aa)
	v1g88316	Predicted protein. (337 aa)
	v1g242394	Predicted protein. (1144 aa)
	v1g246770	Predicted protein. (775 aa)
	v1g199928	Predicted protein; Belongs to the universal ribosomal protein uS5 family. (270 aa)
	v1g167864	Predicted protein. (742 aa)
	v1g118942	Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprenes. (406 aa)
	v1g245688	Mevalonate kinase. (415 aa)
	v1g124869	Predicted protein. (369 aa)
	v1g245162	Predicted protein. (141 aa)
	v1g189775	Predicted protein. (975 aa)
	v1g178799	Predicted protein; Belongs to the universal ribosomal protein uS5 family. (288 aa)
	v1g197607	Predicted protein. (451 aa)
	v1g82384	Predicted protein. (346 aa)
	v1g136650	Predicted protein; Belongs to the peptidase S16 family. (825 aa)
	v1g231142	Predicted protein. (786 aa)
	v1g155616	Predicted protein; Belongs to the universal ribosomal protein uS9 family. (130 aa)
	v1g6609	Predicted protein. (269 aa)

Your Current Organism:

Nematostella vectensis

NCBI taxonomy Id: 45351
Other names: N. vectensis, starlet sea anemone

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
v1g118942	v1g245688	A7SHV3	A7SJK4	Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprenes.	Mevalonate kinase.	0.998
v1g124869	v1g245688	A7SNG6	A7SJK4	Predicted protein.	Mevalonate kinase.	0.461
v1g155616	v1g162182	A7TD13	A7RSB9	Predicted protein; Belongs to the universal ribosomal protein uS9 family.	Predicted protein.	0.677
v1g155616	v1g178799	A7TD13	A7RJJ7	Predicted protein; Belongs to the universal ribosomal protein uS9 family.	Predicted protein; Belongs to the universal ribosomal protein uS5 family.	0.983
v1g155616	v1g189775	A7TD13	A7SGZ8	Predicted protein; Belongs to the universal ribosomal protein uS9 family.	Predicted protein.	0.677
v1g155616	v1g199928	A7TD13	A7RP03	Predicted protein; Belongs to the universal ribosomal protein uS9 family.	Predicted protein; Belongs to the universal ribosomal protein uS5 family.	0.993
v1g155616	v1g236547	A7TD13	A7RR04	Predicted protein; Belongs to the universal ribosomal protein uS9 family.	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	0.677
v1g155616	v1g242394	A7TD13	A7S2I1	Predicted protein; Belongs to the universal ribosomal protein uS9 family.	Predicted protein.	0.677
v1g155616	v1g245162	A7TD13	A7SGN4	Predicted protein; Belongs to the universal ribosomal protein uS9 family.	Predicted protein.	0.888
v1g162182	v1g155616	A7RSB9	A7TD13	Predicted protein.	Predicted protein; Belongs to the universal ribosomal protein uS9 family.	0.677
v1g162182	v1g178799	A7RSB9	A7RJJ7	Predicted protein.	Predicted protein; Belongs to the universal ribosomal protein uS5 family.	0.961
v1g162182	v1g199928	A7RSB9	A7RP03	Predicted protein.	Predicted protein; Belongs to the universal ribosomal protein uS5 family.	0.769
v1g162182	v1g245162	A7RSB9	A7SGN4	Predicted protein.	Predicted protein.	0.919
v1g167864	v1g231142	A7S8W4	A7SXZ4	Predicted protein.	Predicted protein.	0.990
v1g167864	v1g246770	A7S8W4	A7SQJ8	Predicted protein.	Predicted protein.	0.990
v1g167864	v1g82384	A7S8W4	A7RHM2	Predicted protein.	Predicted protein.	0.991
v1g167864	v1g88316	A7S8W4	A7RP06	Predicted protein.	Predicted protein.	0.983
v1g178799	v1g155616	A7RJJ7	A7TD13	Predicted protein; Belongs to the universal ribosomal protein uS5 family.	Predicted protein; Belongs to the universal ribosomal protein uS9 family.	0.983
v1g178799	v1g162182	A7RJJ7	A7RSB9	Predicted protein; Belongs to the universal ribosomal protein uS5 family.	Predicted protein.	0.961
v1g178799	v1g189775	A7RJJ7	A7SGZ8	Predicted protein; Belongs to the universal ribosomal protein uS5 family.	Predicted protein.	0.769