(36 nodes) Zinc finger, PHD-type, conserved site network (Nematostella vectensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	v1g183768	Predicted protein. (690 aa)
	v1g167144	Predicted protein. (813 aa)
	v1g226911	Predicted protein. (776 aa)
	v1g229706	Predicted protein. (824 aa)
	v1g116134	Predicted protein. (74 aa)
	v1g130437	Predicted protein. (57 aa)
	v1g128202	Predicted protein. (263 aa)
	v1g191566	Predicted protein. (1134 aa)
	v1g121685	Predicted protein. (199 aa)
	v1g120549	Predicted protein. (845 aa)
	v1g212616	Predicted protein. (364 aa)
	v1g245146	Predicted protein. (606 aa)
	v1g117077	Predicted protein. (57 aa)
	v1g80159	Predicted protein. (464 aa)
	v1g210606	Predicted protein. (494 aa)
	v1g110445	Predicted protein. (446 aa)
	v1g196845	Predicted protein. (383 aa)
	v1g197064	Predicted protein. (431 aa)
	v1g86153	Predicted protein. (180 aa)
	v1g39881	Predicted protein. (55 aa)
	v1g240784	Predicted protein. (386 aa)
	v1g93974	Predicted protein. (519 aa)
	v1g94026	Predicted protein. (317 aa)
	v1g241179	Predicted protein. (1071 aa)
	v1g36194	Predicted protein. (229 aa)
	v1g96791	Predicted protein. (189 aa)
	v1g232401	Inhibitor of growth protein. (261 aa)
	v1g96987	Predicted protein. (213 aa)
	v1g106759	Predicted protein. (69 aa)
	v1g116372	Predicted protein. (251 aa)
	v1g18566	Predicted protein. (94 aa)
	v1g222471	Predicted protein. (290 aa)
	v1g194978	Predicted protein. (634 aa)
	v1g138493	Predicted protein. (67 aa)
	v1g136105	Predicted protein. (78 aa)
	v1g10765	Predicted protein. (519 aa)

Your Current Organism:

Nematostella vectensis

NCBI taxonomy Id: 45351
Other names: N. vectensis, starlet sea anemone

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
v1g106759	v1g167144	A7S6P9	A7S6Q6	Predicted protein.	Predicted protein.	0.617
v1g106759	v1g245146	A7S6P9	A7SGK9	Predicted protein.	Predicted protein.	0.584
v1g110445	v1g191566	A7S9X9	A7SN37	Predicted protein.	Predicted protein.	0.436
v1g116134	v1g116372	A7SF90	A7SFA6	Predicted protein.	Predicted protein.	0.427
v1g116372	v1g116134	A7SFA6	A7SF90	Predicted protein.	Predicted protein.	0.427
v1g116372	v1g194978	A7SFA6	A7SZK7	Predicted protein.	Predicted protein.	0.445
v1g117077	v1g167144	A7SG37	A7S6Q6	Predicted protein.	Predicted protein.	0.617
v1g121685	v1g197064	A7SKI4	A7RH46	Predicted protein.	Predicted protein.	0.411
v1g130437	v1g167144	A7SSY4	A7S6Q6	Predicted protein.	Predicted protein.	0.617
v1g138493	v1g191566	A7SYY9	A7SN37	Predicted protein.	Predicted protein.	0.510
v1g167144	v1g106759	A7S6Q6	A7S6P9	Predicted protein.	Predicted protein.	0.617
v1g167144	v1g117077	A7S6Q6	A7SG37	Predicted protein.	Predicted protein.	0.617
v1g167144	v1g130437	A7S6Q6	A7SSY4	Predicted protein.	Predicted protein.	0.617
v1g167144	v1g232401	A7S6Q6	A7RXJ4	Predicted protein.	Inhibitor of growth protein.	0.571
v1g191566	v1g110445	A7SN37	A7S9X9	Predicted protein.	Predicted protein.	0.436
v1g191566	v1g138493	A7SN37	A7SYY9	Predicted protein.	Predicted protein.	0.510
v1g191566	v1g241179	A7SN37	A7RWI3	Predicted protein.	Predicted protein.	0.700
v1g194978	v1g116372	A7SZK7	A7SFA6	Predicted protein.	Predicted protein.	0.445
v1g197064	v1g121685	A7RH46	A7SKI4	Predicted protein.	Predicted protein.	0.411
v1g197064	v1g36194	A7RH46	A7RWY0	Predicted protein.	Predicted protein.	0.411