(37 nodes) Cadherin conserved site network (Nematostella vectensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	v1g197466	Predicted protein. (4697 aa)
	v1g238641	Predicted protein. (136 aa)
	v1g84228	Predicted protein; Belongs to the G-protein coupled receptor 2 family. (2493 aa)
	v1g239897	Predicted protein; Cadherins are calcium-dependent cell adhesion proteins. (3766 aa)
	v1g239898	Predicted protein. (3186 aa)
	v1g89517	Predicted protein. (1888 aa)
	v1g30053	Predicted protein. (1852 aa)
	v1g91648	Predicted protein. (550 aa)
	v1g98014	Predicted protein. (351 aa)
	v1g20161	Predicted protein. (4187 aa)
	v1g207189	Predicted protein. (1610 aa)
	v1g243040	Predicted protein. (1096 aa)
	v1g207195	Predicted protein. (4639 aa)
	v1g107177	Predicted protein. (2676 aa)
	v1g10520	Predicted protein. (868 aa)
	v1g67148	Predicted protein. (104 aa)
	v1g244010	Predicted protein; Cadherins are calcium-dependent cell adhesion proteins. (4354 aa)
	v1g118913	Predicted protein. (470 aa)
	v1g122785	Predicted protein. (1677 aa)
	v1g20073	Predicted protein. (1781 aa)
	v1g40605	Predicted protein. (377 aa)
	v1g40082	Predicted protein. (850 aa)
	v1g124570	Predicted protein. (471 aa)
	v1g214866	Predicted protein. (943 aa)
	v1g18675	Predicted protein. (116 aa)
	v1g41182	Predicted protein. (479 aa)
	v1g129882	Predicted protein. (814 aa)
	v1g129879	Predicted protein. (460 aa)
	v1g248422	Predicted protein. (2058 aa)
	v1g220674	Predicted protein. (341 aa)
	v1g221587	Predicted protein. (1012 aa)
	v1g4597	Predicted protein. (175 aa)
	v1g153449	Predicted protein. (389 aa)
	v1g225510	Predicted protein. (155 aa)
	v1g48709	Predicted protein. (347 aa)
	v1g225923	Predicted protein. (107 aa)
	v1g225928	Predicted protein. (102 aa)

Your Current Organism:

Nematostella vectensis

NCBI taxonomy Id: 45351
Other names: N. vectensis, starlet sea anemone

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
v1g122785	v1g40605	A7SLK9	A7SN96	Predicted protein.	Predicted protein.	0.560
v1g18675	v1g225928	A7SQA1	A8DW83	Predicted protein.	Predicted protein.	0.522
v1g220674	v1g225928	A7T102	A8DW83	Predicted protein.	Predicted protein.	0.430
v1g221587	v1g239897	A7T2Z2	A7RQ19	Predicted protein.	Predicted protein; Cadherins are calcium-dependent cell adhesion proteins.	0.408
v1g221587	v1g239898	A7T2Z2	A7RQ20	Predicted protein.	Predicted protein.	0.414
v1g221587	v1g244010	A7T2Z2	A7SAP5	Predicted protein.	Predicted protein; Cadherins are calcium-dependent cell adhesion proteins.	0.400
v1g225923	v1g225928	A8DW72	A8DW83	Predicted protein.	Predicted protein.	0.529
v1g225923	v1g67148	A8DW72	A7S9Y4	Predicted protein.	Predicted protein.	0.506
v1g225928	v1g18675	A8DW83	A7SQA1	Predicted protein.	Predicted protein.	0.522
v1g225928	v1g220674	A8DW83	A7T102	Predicted protein.	Predicted protein.	0.430
v1g225928	v1g225923	A8DW83	A8DW72	Predicted protein.	Predicted protein.	0.529
v1g225928	v1g238641	A8DW83	A7RIY4	Predicted protein.	Predicted protein.	0.529
v1g225928	v1g67148	A8DW83	A7S9Y4	Predicted protein.	Predicted protein.	0.510
v1g225928	v1g91648	A8DW83	A7RRZ9	Predicted protein.	Predicted protein.	0.423
v1g238641	v1g225928	A7RIY4	A8DW83	Predicted protein.	Predicted protein.	0.529
v1g238641	v1g98014	A7RIY4	A7RYP6	Predicted protein.	Predicted protein.	0.521
v1g239897	v1g221587	A7RQ19	A7T2Z2	Predicted protein; Cadherins are calcium-dependent cell adhesion proteins.	Predicted protein.	0.408
v1g239898	v1g221587	A7RQ20	A7T2Z2	Predicted protein.	Predicted protein.	0.414
v1g244010	v1g221587	A7SAP5	A7T2Z2	Predicted protein; Cadherins are calcium-dependent cell adhesion proteins.	Predicted protein.	0.400
v1g40605	v1g122785	A7SN96	A7SLK9	Predicted protein.	Predicted protein.	0.560