(40 nodes) AH/BAR domain superfamily network (Nematostella vectensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	v1g228048	Predicted protein. (440 aa)
	v1g225460	Predicted protein. (176 aa)
	v1g220969	Predicted protein. (481 aa)
	v1g194841	Predicted protein. (348 aa)
	v1g219233	Predicted protein. (324 aa)
	v1g248001	Predicted protein. (575 aa)
	v1g134716	Predicted protein. (391 aa)
	v1g247042	Predicted protein. (426 aa)
	v1g246794	Predicted protein. (428 aa)
	v1g127054	Predicted protein. (1000 aa)
	v1g246594	Predicted protein. (648 aa)
	v1g246345	Predicted protein. (435 aa)
	v1g12640	Predicted protein. (261 aa)
	v1g212997	Predicted protein. (499 aa)
	v1g115533	Predicted protein. (519 aa)
	v1g235323	Predicted protein. (371 aa)
	v1g169360	Predicted protein. (347 aa)
	v1g210210	Predicted protein. (610 aa)
	v1g244097	Predicted protein. (883 aa)
	v1g53826	Predicted protein. (221 aa)
	v1g51540	Predicted protein. (280 aa)
	v1g242048	Predicted protein. (257 aa)
	v1g229120	Predicted protein. (439 aa)
	v1g204606	Predicted protein. (717 aa)
	v1g241700	Predicted protein. (514 aa)
	v1g163904	Predicted protein. (491 aa)
	v1g240748	Predicted protein. (1695 aa)
	v1g201260	Predicted protein. (859 aa)
	v1g161158	Sorting nexin; Involved in several stages of intracellular trafficking. (391 aa)
	v1g87802	Predicted protein. (363 aa)
	v1g88221	Predicted protein. (712 aa)
	v1g160716	Predicted protein. (356 aa)
	v1g160673	Predicted protein. (520 aa)
	v1g86734	Predicted protein. (94 aa)
	v1g199314	Predicted protein. (326 aa)
	v1g159777	Predicted protein. (445 aa)
	v1g84158	Predicted protein. (676 aa)
	v1g237996	Predicted protein. (632 aa)
	v1g80242	Predicted protein. (250 aa)
	v1g176880	Predicted protein. (522 aa)

Your Current Organism:

Nematostella vectensis

NCBI taxonomy Id: 45351
Other names: N. vectensis, starlet sea anemone

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
v1g12640	v1g160673	A7SJ57	A7RMS6	Predicted protein.	Predicted protein.	0.567
v1g12640	v1g176880	A7SJ57	A7REN9	Predicted protein.	Predicted protein.	0.488
v1g12640	v1g219233	A7SJ57	A7SXV9	Predicted protein.	Predicted protein.	0.488
v1g12640	v1g229120	A7SJ57	A7S0K6	Predicted protein.	Predicted protein.	0.482
v1g12640	v1g241700	A7SJ57	A7RZ48	Predicted protein.	Predicted protein.	0.567
v1g12640	v1g242048	A7SJ57	A7S0R8	Predicted protein.	Predicted protein.	0.545
v1g12640	v1g244097	A7SJ57	A7SBA8	Predicted protein.	Predicted protein.	0.503
v1g12640	v1g246594	A7SJ57	A7SPL1	Predicted protein.	Predicted protein.	0.545
v1g12640	v1g51540	A7SJ57	A7S2R6	Predicted protein.	Predicted protein.	0.482
v1g12640	v1g88221	A7SJ57	A7RNI7	Predicted protein.	Predicted protein.	0.578
v1g134716	v1g160716	A7SW17	A7RMW0	Predicted protein.	Predicted protein.	0.559
v1g134716	v1g161158	A7SW17	A7RP73	Predicted protein.	Sorting nexin; Involved in several stages of intracellular trafficking.	0.988
v1g134716	v1g176880	A7SW17	A7REN9	Predicted protein.	Predicted protein.	0.754
v1g134716	v1g194841	A7SW17	A7SYP4	Predicted protein.	Predicted protein.	0.559
v1g134716	v1g219233	A7SW17	A7SXV9	Predicted protein.	Predicted protein.	0.754
v1g134716	v1g225460	A7SW17	A8DVA5	Predicted protein.	Predicted protein.	0.661
v1g134716	v1g246794	A7SW17	A7SQP0	Predicted protein.	Predicted protein.	0.729
v1g134716	v1g247042	A7SW17	A7SS20	Predicted protein.	Predicted protein.	0.661
v1g134716	v1g248001	A7SW17	A7SXR2	Predicted protein.	Predicted protein.	0.654
v1g134716	v1g87802	A7SW17	A7RNQ3	Predicted protein.	Predicted protein.	0.638