(66 nodes) Periplasmic binding protein-like I network (Nematostella vectensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	v1g171792	Predicted protein. (893 aa)
	v1g40374	Predicted protein. (797 aa)
	v1g40255	Predicted protein. (457 aa)
	v1g215562	Predicted protein. (382 aa)
	v1g246961	Predicted protein. (1143 aa)
	v1g216511	Predicted protein. (1082 aa)
	v1g129319	Predicted protein. (470 aa)
	v1g216603	Guanylate cyclase. (592 aa)
	v1g217727	Predicted protein. (704 aa)
	v1g19898	Predicted protein. (55 aa)
	v1g218792	Predicted protein. (870 aa)
	v1g138852	Predicted protein. (96 aa)
	v1g141731	Predicted protein. (871 aa)
	v1g145351	Predicted protein. (52 aa)
	v1g222590	Guanylate cyclase. (284 aa)
	v1g223171	Predicted protein. (371 aa)
	v1g243252	Predicted protein. (1493 aa)
	v1g9673	Predicted protein. (54 aa)
	v1g9504	Predicted protein. (54 aa)
	v1g6498	Predicted protein. (151 aa)
	v1g99516	Predicted protein. (276 aa)
	v1g9591	Predicted protein. (100 aa)
	v1g60580	Predicted protein. (701 aa)
	v1g99689	Predicted protein. (864 aa)
	v1g99708	Predicted protein. (452 aa)
	v1g21060	Predicted protein. (807 aa)
	v1g224148	Guanylate cyclase. (610 aa)
	v1g225747	Predicted protein. (255 aa)
	v1g9854	Predicted protein. (75 aa)
	v1g204939	Predicted protein. (849 aa)
	v1g223753	Predicted protein. (131 aa)
	v1g244104	Predicted protein. (1015 aa)
	v1g209965	Predicted protein. (560 aa)
	v1g114044	Predicted protein. (805 aa)
	v1g210465	Predicted protein. (746 aa)
	v1g210496	Predicted protein. (615 aa)
	v1g244506	Predicted protein. (1022 aa)
	v1g211456	Predicted protein. (929 aa)
	v1g212089	Predicted protein. (878 aa)
	v1g15144	Predicted protein. (220 aa)
	v1g158857	Predicted protein. (719 aa)
	v1g197524	Predicted protein. (921 aa)
	v1g198759	Predicted protein. (985 aa)
	v1g198894	Predicted protein. (933 aa)
	v1g86565	Predicted protein. (649 aa)
	v1g30901	Predicted protein. (804 aa)
	v1g87697	Predicted protein. (688 aa)
	v1g88728	Predicted protein. (764 aa)
	v1g200214	Predicted protein. (892 aa)
	v1g239821	Predicted protein. (893 aa)
	v1g239847	Predicted protein. (924 aa)
	v1g31331	Predicted protein. (791 aa)
	v1g200922	Predicted protein. (881 aa)
	v1g201150	Predicted protein. (1083 aa)
	v1g201378	Predicted protein. (855 aa)
	v1g93704	Guanylate cyclase. (346 aa)
	v1g241281	Predicted protein. (898 aa)
	v1g96465	Predicted protein. (150 aa)
	v1g29887	Predicted protein. (63 aa)
	v1g28047	Predicted protein. (94 aa)
	v1g204466	Predicted protein. (847 aa)
	v1g204940	Predicted protein. (370 aa)
	v1g205522	Predicted protein. (850 aa)
	v1g206093	Predicted protein; Belongs to the G-protein coupled receptor 3 family. (1272 aa)
	v1g229374	Predicted protein. (801 aa)
	v1g105783	Predicted protein; Belongs to the G-protein coupled receptor 3 family. (449 aa)

Your Current Organism:

Nematostella vectensis

NCBI taxonomy Id: 45351
Other names: N. vectensis, starlet sea anemone

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
v1g158857	v1g206093	A7RHX2	A7S379	Predicted protein.	Predicted protein; Belongs to the G-protein coupled receptor 3 family.	0.611
v1g158857	v1g210465	A7RHX2	A7SD79	Predicted protein.	Predicted protein.	0.598
v1g158857	v1g210496	A7RHX2	A7SDA2	Predicted protein.	Predicted protein.	0.579
v1g158857	v1g223171	A7RHX2	A7T6W7	Predicted protein.	Predicted protein.	0.561
v1g158857	v1g239821	A7RHX2	A7RPP5	Predicted protein.	Predicted protein.	0.581
v1g158857	v1g243252	A7RHX2	A7S6R9	Predicted protein.	Predicted protein.	0.540
v1g158857	v1g244104	A7RHX2	A7SBD0	Predicted protein.	Predicted protein.	0.574
v1g158857	v1g40255	A7RHX2	A7SMA2	Predicted protein.	Predicted protein.	0.586
v1g158857	v1g86565	A7RHX2	A7RM77	Predicted protein.	Predicted protein.	0.566
v1g158857	v1g87697	A7RHX2	A7RNB3	Predicted protein.	Predicted protein.	0.569
v1g158857	v1g99516	A7RHX2	A7S035	Predicted protein.	Predicted protein.	0.557
v1g206093	v1g158857	A7S379	A7RHX2	Predicted protein; Belongs to the G-protein coupled receptor 3 family.	Predicted protein.	0.611
v1g206093	v1g210465	A7S379	A7SD79	Predicted protein; Belongs to the G-protein coupled receptor 3 family.	Predicted protein.	0.619
v1g206093	v1g210496	A7S379	A7SDA2	Predicted protein; Belongs to the G-protein coupled receptor 3 family.	Predicted protein.	0.620
v1g206093	v1g223171	A7S379	A7T6W7	Predicted protein; Belongs to the G-protein coupled receptor 3 family.	Predicted protein.	0.600
v1g206093	v1g239821	A7S379	A7RPP5	Predicted protein; Belongs to the G-protein coupled receptor 3 family.	Predicted protein.	0.605
v1g206093	v1g243252	A7S379	A7S6R9	Predicted protein; Belongs to the G-protein coupled receptor 3 family.	Predicted protein.	0.540
v1g206093	v1g244104	A7S379	A7SBD0	Predicted protein; Belongs to the G-protein coupled receptor 3 family.	Predicted protein.	0.624
v1g206093	v1g40255	A7S379	A7SMA2	Predicted protein; Belongs to the G-protein coupled receptor 3 family.	Predicted protein.	0.606
v1g206093	v1g86565	A7S379	A7RM77	Predicted protein; Belongs to the G-protein coupled receptor 3 family.	Predicted protein.	0.601