(64 nodes) Ribonuclease H superfamily network (Nematostella vectensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	v1g232665	Predicted protein. (153 aa)
	v1g97672	Predicted protein. (204 aa)
	v1g241233	Predicted protein. (461 aa)
	v1g203271	Predicted protein. (268 aa)
	v1g242846	Predicted protein. (449 aa)
	v1g202054	Predicted protein. (151 aa)
	v1g93188	Predicted protein. (446 aa)
	v1g180719	Predicted protein; Belongs to the argonaute family. (854 aa)
	v1g200432	Predicted protein. (297 aa)
	v1g208764	Predicted protein. (446 aa)
	v1g109844	Predicted protein. (204 aa)
	v1g243802	Predicted protein. (855 aa)
	v1g209170	Predicted protein. (171 aa)
	v1g168297	DNA polymerase. (1242 aa)
	v1g98712	Predicted protein. (64 aa)
	v1g88181	Predicted protein. (485 aa)
	v1g199316	Predicted protein. (234 aa)
	v1g82503	Predicted protein. (277 aa)
	v1g233970	DNA polymerase. (1092 aa)
	v1g79423	Predicted protein; Belongs to the argonaute family. (871 aa)
	v1g43493	Predicted protein. (165 aa)
	v1g243990	Ribonuclease H1; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (272 aa)
	v1g209448	Predicted protein. (128 aa)
	v1g26712	Predicted protein. (201 aa)
	v1g210941	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. (569 aa)
	v1g117048	Predicted protein. (96 aa)
	v1g211888	Predicted protein. (270 aa)
	v1g189578	Predicted protein. (277 aa)
	v1g211937	Predicted protein. (188 aa)
	v1g246029	Predicted protein. (275 aa)
	v1g214272	Predicted protein. (239 aa)
	v1g127599	Predicted protein; Belongs to the argonaute family. (747 aa)
	v1g215907	Predicted protein. (179 aa)
	v1g75770	Predicted protein. (133 aa)
	v1g216592	Predicted protein. (846 aa)
	v1g30450	Predicted protein; Belongs to the argonaute family. (743 aa)
	v1g113379	Predicted protein. (425 aa)
	v1g209880	Predicted protein. (220 aa)
	v1g56219	Predicted protein. (167 aa)
	v1g119951	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2250 aa)
	v1g245522	Predicted protein. (439 aa)
	v1g215911	Predicted protein. (363 aa)
	v1g212620	Predicted protein. (311 aa)
	v1g245243	Predicted protein. (365 aa)
	v1g118106	Predicted protein. (222 aa)
	v1g218459	Predicted protein. (270 aa)
	v1g218348	Predicted protein. (750 aa)
	v1g217095	Predicted protein. (182 aa)
	v1g129645	Predicted protein. (552 aa)
	v1g100325	Predicted protein. (126 aa)
	v1g100526	Predicted protein. (181 aa)
	v1g205373	Predicted protein. (640 aa)
	v1g102086	DNA polymerase. (497 aa)
	v1g206282	Predicted protein. (267 aa)
	v1g226058	Predicted protein. (256 aa)
	v1g150526	Predicted protein. (89 aa)
	v1g223320	Predicted protein. (180 aa)
	v1g55155	Predicted protein. (59 aa)
	v1g222829	Predicted protein. (337 aa)
	v1g222014	Predicted protein. (162 aa)
	v1g248663	Predicted protein. (460 aa)
	v1g221392	Predicted protein. (324 aa)
	v1g1365	Predicted protein. (459 aa)
	v1g219695	Predicted protein. (221 aa)

Your Current Organism:

Nematostella vectensis

NCBI taxonomy Id: 45351
Other names: N. vectensis, starlet sea anemone

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
v1g100325	v1g100526	A7S0U8	A7S141	Predicted protein.	Predicted protein.	0.905
v1g100325	v1g129645	A7S0U8	A7SSB3	Predicted protein.	Predicted protein.	0.505
v1g100325	v1g209170	A7S0U8	A7SA98	Predicted protein.	Predicted protein.	0.946
v1g100526	v1g100325	A7S141	A7S0U8	Predicted protein.	Predicted protein.	0.905
v1g100526	v1g129645	A7S141	A7SSB3	Predicted protein.	Predicted protein.	0.505
v1g100526	v1g209170	A7S141	A7SA98	Predicted protein.	Predicted protein.	0.946
v1g102086	v1g119951	A7S2J9	A7SIT9	DNA polymerase.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.858
v1g102086	v1g168297	A7S2J9	A7SAB6	DNA polymerase.	DNA polymerase.	0.645
v1g102086	v1g208764	A7S2J9	A7S9A8	DNA polymerase.	Predicted protein.	0.489
v1g102086	v1g210941	A7S2J9	A7SEB2	DNA polymerase.	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	0.489
v1g102086	v1g233970	A7S2J9	A7RH52	DNA polymerase.	DNA polymerase.	0.846
v1g102086	v1g97672	A7S2J9	A7RY54	DNA polymerase.	Predicted protein.	0.489
v1g118106	v1g82503	A7SH41	A7RIG2	Predicted protein.	Predicted protein.	0.454
v1g119951	v1g102086	A7SIT9	A7S2J9	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	DNA polymerase.	0.858
v1g119951	v1g168297	A7SIT9	A7SAB6	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	DNA polymerase.	0.966
v1g119951	v1g208764	A7SIT9	A7S9A8	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	Predicted protein.	0.676
v1g119951	v1g210941	A7SIT9	A7SEB2	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	0.928
v1g119951	v1g233970	A7SIT9	A7RH52	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	DNA polymerase.	0.991
v1g119951	v1g243990	A7SIT9	A7SAK2	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	Ribonuclease H1; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.	0.558
v1g119951	v1g97672	A7SIT9	A7RY54	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	Predicted protein.	0.676