(27 nodes) Cyclin-like superfamily network (Nematostella vectensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	v1g167568	Predicted protein; Belongs to the cyclin family. (306 aa)
	v1g114480	Predicted protein. (114 aa)
	v1g169387	Predicted protein. (146 aa)
	v1g208415	Predicted protein; Belongs to the cyclin family. (231 aa)
	v1g35442	Predicted protein; Belongs to the cyclin family. (184 aa)
	v1g79805	Predicted protein; Belongs to the cyclin family. (182 aa)
	v1g80476	Predicted protein. (154 aa)
	v1g81761	Predicted protein; Belongs to the cyclin family. (238 aa)
	v1g81999	Predicted protein; Belongs to the cyclin family. (250 aa)
	v1g83332	Predicted protein; Belongs to the cyclin family. (201 aa)
	v1g239885	Predicted protein. (1083 aa)
	v1g240343	Predicted protein. (674 aa)
	v1g91756	Predicted protein. (237 aa)
	v1g99661	Predicted protein; Belongs to the cyclin family. (255 aa)
	v1g188880	Predicted protein; Belongs to the cyclin family. (299 aa)
	v1g151434	Predicted protein. (106 aa)
	v1g147404	Predicted protein. (522 aa)
	v1g68493	Predicted protein. (107 aa)
	v1g237657	Predicted protein; Belongs to the cyclin family. (287 aa)
	v1g41570	Predicted protein; Belongs to the cyclin family. (197 aa)
	v1g193420	Predicted protein; Belongs to the cyclin family. (282 aa)
	v1g128041	Predicted protein; Belongs to the cyclin family. (277 aa)
	v1g126046	Predicted protein; Belongs to the cyclin family. (297 aa)
	v1g124800	Predicted protein; Belongs to the cyclin family. (370 aa)
	v1g124606	Predicted protein. (292 aa)
	v1g118178	Predicted protein. (310 aa)
	v1g116977	Predicted protein. (181 aa)

Your Current Organism:

Nematostella vectensis

NCBI taxonomy Id: 45351
Other names: N. vectensis, starlet sea anemone

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
v1g114480	v1g118178	A7SDS2	A7SH79	Predicted protein.	Predicted protein.	0.715
v1g114480	v1g147404	A7SDS2	A7T629	Predicted protein.	Predicted protein.	0.542
v1g114480	v1g169387	A7SDS2	A7SDS0	Predicted protein.	Predicted protein.	0.586
v1g114480	v1g240343	A7SDS2	A7RS80	Predicted protein.	Predicted protein.	0.634
v1g116977	v1g124800	A7SG23	A7SNG7	Predicted protein.	Predicted protein; Belongs to the cyclin family.	0.529
v1g116977	v1g128041	A7SG23	A7SQU4	Predicted protein.	Predicted protein; Belongs to the cyclin family.	0.709
v1g116977	v1g188880	A7SG23	A7SEI5	Predicted protein.	Predicted protein; Belongs to the cyclin family.	0.651
v1g116977	v1g68493	A7SG23	A7T2C0	Predicted protein.	Predicted protein.	0.634
v1g116977	v1g81761	A7SG23	A7RH79	Predicted protein.	Predicted protein; Belongs to the cyclin family.	0.542
v1g116977	v1g81999	A7SG23	A7RI00	Predicted protein.	Predicted protein; Belongs to the cyclin family.	0.594
v1g118178	v1g114480	A7SH79	A7SDS2	Predicted protein.	Predicted protein.	0.715
v1g118178	v1g147404	A7SH79	A7T629	Predicted protein.	Predicted protein.	0.715
v1g118178	v1g167568	A7SH79	A7S801	Predicted protein.	Predicted protein; Belongs to the cyclin family.	0.965
v1g118178	v1g169387	A7SH79	A7SDS0	Predicted protein.	Predicted protein.	0.406
v1g118178	v1g193420	A7SH79	A7STP9	Predicted protein.	Predicted protein; Belongs to the cyclin family.	0.639
v1g118178	v1g240343	A7SH79	A7RS80	Predicted protein.	Predicted protein.	0.705
v1g118178	v1g83332	A7SH79	A7RIW0	Predicted protein.	Predicted protein; Belongs to the cyclin family.	0.753
v1g118178	v1g91756	A7SH79	A7RSI9	Predicted protein.	Predicted protein.	0.712
v1g118178	v1g99661	A7SH79	A7S058	Predicted protein.	Predicted protein; Belongs to the cyclin family.	0.752
v1g124606	v1g128041	A7SNA4	A7SQU4	Predicted protein.	Predicted protein; Belongs to the cyclin family.	0.553