(48 nodes) Recycling pathway of L1 network (Nematostella vectensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	v1g384	Predicted protein. (412 aa)
	v1g134122	Predicted protein. (255 aa)
	v1g3250	Predicted protein. (170 aa)
	v1g221270	Predicted protein. (505 aa)
	v1g919	Predicted protein. (240 aa)
	v1g2608	Predicted protein. (354 aa)
	v1g223575	Predicted protein. (184 aa)
	v1g150734	Predicted protein. (317 aa)
	v1g224038	Predicted protein. (143 aa)
	v1g3806	Predicted protein. (253 aa)
	v1g4310	Predicted protein. (197 aa)
	v1g224641	Predicted protein. (238 aa)
	v1g4493	Predicted protein. (303 aa)
	v1g9083	Predicted protein. (112 aa)
	v1g9250	Predicted protein. (111 aa)
	v1g216821	Predicted protein. (742 aa)
	v1g12396	Predicted protein. (258 aa)
	v1g41698	Predicted protein. (270 aa)
	v1g42171	Predicted protein. (258 aa)
	v1g19118	Predicted protein. (95 aa)
	v1g127215	Predicted protein. (111 aa)
	v1g126298	Predicted protein. (97 aa)
	v1g213179	Predicted protein. (338 aa)
	v1g116985	Predicted protein. (352 aa)
	v1g211235	Predicted protein. (642 aa)
	v1g210294	Predicted protein. (609 aa)
	v1g113453	Predicted protein. (217 aa)
	v1g243939	Predicted protein. (1265 aa)
	v1g110159	Predicted protein. (354 aa)
	v1g110059	Predicted protein. (122 aa)
	v1g208719	Predicted protein. (393 aa)
	v1g28108	Predicted protein. (118 aa)
	v1g102934	Predicted protein; Belongs to the adaptor complexes medium subunit family. (429 aa)
	v1g205787	Predicted protein. (824 aa)
	v1g101531	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (142 aa)
	v1g101677	Predicted protein. (113 aa)
	v1g164250	Predicted protein. (571 aa)
	v1g201761	Predicted protein. (613 aa)
	v1g200560	Predicted protein. (807 aa)
	v1g33857	Predicted protein. (341 aa)
	v1g86049	Predicted protein. (362 aa)
	v1g35366	Predicted protein. (292 aa)
	v1g34322	Predicted protein. (354 aa)
	v1g82974	Predicted protein. (364 aa)
	v1g81752	Predicted protein. (118 aa)
	v1g236331	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. (943 aa)
	v1g80132	Predicted protein. (124 aa)
	v1g79287	Predicted protein. (67 aa)

Your Current Organism:

Nematostella vectensis

NCBI taxonomy Id: 45351
Other names: N. vectensis, starlet sea anemone

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
v1g101531	v1g102934	A7S269	A7S370	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Predicted protein; Belongs to the adaptor complexes medium subunit family.	0.999
v1g101531	v1g164250	A7S269	A7RYM9	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Predicted protein.	0.838
v1g101531	v1g236331	A7S269	A7RH33	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.998
v1g102934	v1g101531	A7S370	A7S269	Predicted protein; Belongs to the adaptor complexes medium subunit family.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.999
v1g102934	v1g164250	A7S370	A7RYM9	Predicted protein; Belongs to the adaptor complexes medium subunit family.	Predicted protein.	0.861
v1g102934	v1g236331	A7S370	A7RH33	Predicted protein; Belongs to the adaptor complexes medium subunit family.	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.998
v1g110159	v1g113453	A7S9H7	A7SCM0	Predicted protein.	Predicted protein.	0.749
v1g110159	v1g216821	A7S9H7	A7SSL3	Predicted protein.	Predicted protein.	0.702
v1g110159	v1g384	A7S9H7	A7SVH4	Predicted protein.	Predicted protein.	0.893
v1g113453	v1g110159	A7SCM0	A7S9H7	Predicted protein.	Predicted protein.	0.749
v1g113453	v1g12396	A7SCM0	A7SSL1	Predicted protein.	Predicted protein.	0.899
v1g113453	v1g33857	A7SCM0	A7RLL3	Predicted protein.	Predicted protein.	0.807
v1g113453	v1g35366	A7SCM0	A7RLL1	Predicted protein.	Predicted protein.	0.791
v1g113453	v1g384	A7SCM0	A7SVH4	Predicted protein.	Predicted protein.	0.897
v1g116985	v1g216821	A7SFY2	A7SSL3	Predicted protein.	Predicted protein.	0.520
v1g116985	v1g384	A7SFY2	A7SVH4	Predicted protein.	Predicted protein.	0.879
v1g12396	v1g113453	A7SSL1	A7SCM0	Predicted protein.	Predicted protein.	0.899
v1g12396	v1g150734	A7SSL1	A7T8Y6	Predicted protein.	Predicted protein.	0.743
v1g12396	v1g205787	A7SSL1	A7S2I3	Predicted protein.	Predicted protein.	0.684
v1g12396	v1g216821	A7SSL1	A7SSL3	Predicted protein.	Predicted protein.	0.771