(8 nodes) non-SMC mitotic condensation complex subunit 1 network (Nematostella vectensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	v1g10271	Predicted protein. (1367 aa)
	v1g124098	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. (961 aa)
	v1g186367	Coatomer subunit gamma; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. (881 aa)
	v1g145560	Predicted protein. (93 aa)
	v1g5735	Predicted protein. (83 aa)
	v1g134675	Predicted protein. (378 aa)
	v1g114271	Predicted protein. (719 aa)
	v1g190491	AP complex subunit beta. (882 aa)

Your Current Organism:

Nematostella vectensis

NCBI taxonomy Id: 45351
Other names: N. vectensis, starlet sea anemone

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
v1g114271	v1g134675	A7SDJ0	A7SW11	Predicted protein.	Predicted protein.	0.775
v1g114271	v1g145560	A7SDJ0	A7T4G3	Predicted protein.	Predicted protein.	0.775
v1g114271	v1g190491	A7SDJ0	A7SJK8	Predicted protein.	AP complex subunit beta.	0.858
v1g114271	v1g5735	A7SDJ0	A7T2V6	Predicted protein.	Predicted protein.	0.976
v1g124098	v1g186367	A7SMS0	A7S6Q5	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	Coatomer subunit gamma; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	0.969
v1g134675	v1g114271	A7SW11	A7SDJ0	Predicted protein.	Predicted protein.	0.775
v1g134675	v1g190491	A7SW11	A7SJK8	Predicted protein.	AP complex subunit beta.	0.506
v1g145560	v1g114271	A7T4G3	A7SDJ0	Predicted protein.	Predicted protein.	0.775
v1g145560	v1g190491	A7T4G3	A7SJK8	Predicted protein.	AP complex subunit beta.	0.506
v1g186367	v1g124098	A7S6Q5	A7SMS0	Coatomer subunit gamma; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	0.969
v1g186367	v1g190491	A7S6Q5	A7SJK8	Coatomer subunit gamma; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	AP complex subunit beta.	0.741
v1g190491	v1g114271	A7SJK8	A7SDJ0	AP complex subunit beta.	Predicted protein.	0.858
v1g190491	v1g134675	A7SJK8	A7SW11	AP complex subunit beta.	Predicted protein.	0.506
v1g190491	v1g145560	A7SJK8	A7T4G3	AP complex subunit beta.	Predicted protein.	0.506
v1g190491	v1g186367	A7SJK8	A7S6Q5	AP complex subunit beta.	Coatomer subunit gamma; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	0.741
v1g190491	v1g5735	A7SJK8	A7T2V6	AP complex subunit beta.	Predicted protein.	0.506
v1g5735	v1g114271	A7T2V6	A7SDJ0	Predicted protein.	Predicted protein.	0.976
v1g5735	v1g190491	A7T2V6	A7SJK8	Predicted protein.	AP complex subunit beta.	0.506