(18 nodes) Chromatin organization modifier domain network (Nematostella vectensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	v1g225305	Predicted protein. (126 aa)
	v1g151943	Predicted protein. (64 aa)
	v1g222195	Predicted protein. (100 aa)
	v1g30104	Predicted protein. (1360 aa)
	v1g239575	Predicted protein. (170 aa)
	v1g201096	Predicted protein. (126 aa)
	v1g202392	Predicted protein. (126 aa)
	v1g243415	Predicted protein. (340 aa)
	v1g167841	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (390 aa)
	v1g229706	Predicted protein. (824 aa)
	v1g113169	Predicted protein. (93 aa)
	v1g245927	Predicted protein. (899 aa)
	v1g124260	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (478 aa)
	v1g221552	Predicted protein. (318 aa)
	v1g238789	Predicted protein. (454 aa)
	v1g177252	Predicted protein. (307 aa)
	v1g30373	Predicted protein. (961 aa)
	v1g158808	Predicted protein. (206 aa)

Your Current Organism:

Nematostella vectensis

NCBI taxonomy Id: 45351
Other names: N. vectensis, starlet sea anemone

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
v1g113169	v1g124260	A7SCD5	A7SMW6	Predicted protein.	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	0.807
v1g113169	v1g167841	A7SCD5	A7S8T4	Predicted protein.	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	0.861
v1g113169	v1g177252	A7SCD5	A7RFQ8	Predicted protein.	Predicted protein.	0.705
v1g113169	v1g30104	A7SCD5	A7RMN4	Predicted protein.	Predicted protein.	0.411
v1g124260	v1g113169	A7SMW6	A7SCD5	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	Predicted protein.	0.807
v1g124260	v1g177252	A7SMW6	A7RFQ8	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	Predicted protein.	0.798
v1g151943	v1g238789	A7TA22	A7RJQ9	Predicted protein.	Predicted protein.	0.552
v1g151943	v1g243415	A7TA22	A7S7R4	Predicted protein.	Predicted protein.	0.544
v1g158808	v1g177252	A7RHT1	A7RFQ8	Predicted protein.	Predicted protein.	0.506
v1g158808	v1g229706	A7RHT1	A7S9J4	Predicted protein.	Predicted protein.	0.659
v1g158808	v1g30104	A7RHT1	A7RMN4	Predicted protein.	Predicted protein.	0.505
v1g167841	v1g113169	A7S8T4	A7SCD5	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	Predicted protein.	0.861
v1g167841	v1g177252	A7S8T4	A7RFQ8	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	Predicted protein.	0.854
v1g177252	v1g113169	A7RFQ8	A7SCD5	Predicted protein.	Predicted protein.	0.705
v1g177252	v1g124260	A7RFQ8	A7SMW6	Predicted protein.	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	0.798
v1g177252	v1g158808	A7RFQ8	A7RHT1	Predicted protein.	Predicted protein.	0.506
v1g177252	v1g167841	A7RFQ8	A7S8T4	Predicted protein.	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	0.854
v1g177252	v1g229706	A7RFQ8	A7S9J4	Predicted protein.	Predicted protein.	0.422
v1g177252	v1g30104	A7RFQ8	A7RMN4	Predicted protein.	Predicted protein.	0.680
v1g222195	v1g245927	A7T4F9	A7SKT7	Predicted protein.	Predicted protein.	0.535