(21 nodes) rRNA catabolic process network (Candida haemulonis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CXQ85_004756	Uncharacterized protein. (370 aa)
	CXQ85_003249	Uncharacterized protein. (353 aa)
	CXQ85_001308	RNase_PH domain-containing protein. (352 aa)
	CXQ85_003456	Uncharacterized protein. (265 aa)
	CXQ85_000553	26S protease regulatory subunit 8; Belongs to the AAA ATPase family. (400 aa)
	CXQ85_002739	AAA domain-containing protein; Belongs to the AAA ATPase family. (434 aa)
	CXQ85_002186	Uncharacterized protein. (238 aa)
	CXQ85_003950	Uncharacterized protein. (346 aa)
	CXQ85_004771	RNase_PH domain-containing protein. (275 aa)
	CXQ85_004107	Uncharacterized protein. (617 aa)
	CXQ85_004024	Uncharacterized protein. (1886 aa)
	CXQ85_000423	RNase_PH domain-containing protein. (289 aa)
	CXQ85_002067	Tr-type G domain-containing protein. (773 aa)
	CXQ85_004465	RNase_PH domain-containing protein. (286 aa)
	CXQ85_004781	3'-5' exonuclease domain-containing protein. (1318 aa)
	CXQ85_004859	ATP-dependent RNA helicase DOB1. (1051 aa)
	CXQ85_001562	EXOSC1 domain-containing protein. (291 aa)
	CXQ85_004625	Uncharacterized protein; Belongs to the RNR ribonuclease family. (976 aa)
	CXQ85_001342	Cell division control protein 48; Belongs to the AAA ATPase family. (872 aa)
	CXQ85_005297	Uncharacterized protein. (243 aa)
	CXQ85_000380	Protein DOM34 homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (387 aa)

Your Current Organism:

Candida haemulonis

NCBI taxonomy Id: 45357
Other names: ATCC 22991, CBS 5149, Candida haemulonii type II, DBVPG 6958, IFO 10001, IGC 3025, JCM 3762, NRRL Y-6693, Torulopsis haemuloni, [. haemulonis, [Candida] haemulonis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CXQ85_000380	CXQ85_002067	A0A2V1AVQ2	A0A2V1ATL7	Protein DOM34 homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs.	Tr-type G domain-containing protein.	0.988
CXQ85_000380	CXQ85_004024	A0A2V1AVQ2	A0A2V1B2N2	Protein DOM34 homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs.	Uncharacterized protein.	0.503
CXQ85_000423	CXQ85_001308	A0A2V1AUE7	A0A2V1AMU9	RNase_PH domain-containing protein.	RNase_PH domain-containing protein.	0.999
CXQ85_000423	CXQ85_001562	A0A2V1AUE7	A0A2V1ALT3	RNase_PH domain-containing protein.	EXOSC1 domain-containing protein.	0.999
CXQ85_000423	CXQ85_002067	A0A2V1AUE7	A0A2V1ATL7	RNase_PH domain-containing protein.	Tr-type G domain-containing protein.	0.948
CXQ85_000423	CXQ85_002186	A0A2V1AUE7	A0A2V1ARC4	RNase_PH domain-containing protein.	Uncharacterized protein.	0.999
CXQ85_000423	CXQ85_003456	A0A2V1AUE7	A0A2V1AP12	RNase_PH domain-containing protein.	Uncharacterized protein.	0.999
CXQ85_000423	CXQ85_003950	A0A2V1AUE7	A0A2V1B139	RNase_PH domain-containing protein.	Uncharacterized protein.	0.999
CXQ85_000423	CXQ85_004024	A0A2V1AUE7	A0A2V1B2N2	RNase_PH domain-containing protein.	Uncharacterized protein.	0.713
CXQ85_000423	CXQ85_004465	A0A2V1AUE7	A0A2V1ASX9	RNase_PH domain-containing protein.	RNase_PH domain-containing protein.	0.999
CXQ85_000423	CXQ85_004625	A0A2V1AUE7	A0A2V1AV16	RNase_PH domain-containing protein.	Uncharacterized protein; Belongs to the RNR ribonuclease family.	0.996
CXQ85_000423	CXQ85_004771	A0A2V1AUE7	A0A2V1AWC4	RNase_PH domain-containing protein.	RNase_PH domain-containing protein.	0.999
CXQ85_000423	CXQ85_004781	A0A2V1AUE7	A0A2V1AWC8	RNase_PH domain-containing protein.	3'-5' exonuclease domain-containing protein.	0.997
CXQ85_000423	CXQ85_004859	A0A2V1AUE7	A0A2V1AWM3	RNase_PH domain-containing protein.	ATP-dependent RNA helicase DOB1.	0.987
CXQ85_000423	CXQ85_005297	A0A2V1AUE7	A0A2V1AVY2	RNase_PH domain-containing protein.	Uncharacterized protein.	0.976
CXQ85_000553	CXQ85_001342	A0A2V1AXJ1	A0A2V1AL50	26S protease regulatory subunit 8; Belongs to the AAA ATPase family.	Cell division control protein 48; Belongs to the AAA ATPase family.	0.735
CXQ85_000553	CXQ85_002739	A0A2V1AXJ1	A0A2V1AYY1	26S protease regulatory subunit 8; Belongs to the AAA ATPase family.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.999
CXQ85_000553	CXQ85_003249	A0A2V1AXJ1	A0A2V1AM92	26S protease regulatory subunit 8; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.694
CXQ85_001308	CXQ85_000423	A0A2V1AMU9	A0A2V1AUE7	RNase_PH domain-containing protein.	RNase_PH domain-containing protein.	0.999
CXQ85_001308	CXQ85_001562	A0A2V1AMU9	A0A2V1ALT3	RNase_PH domain-containing protein.	EXOSC1 domain-containing protein.	0.999

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