STRINGSTRING
Igni_0306 Igni_0306 Igni_0325 Igni_0325 Igni_0326 Igni_0326 Igni_0327 Igni_0327 Igni_0328 Igni_0328 Igni_0329 Igni_0329 Igni_0460 Igni_0460 Igni_0461 Igni_0461 Igni_0462 Igni_0462 Igni_0463 Igni_0463 Igni_0464 Igni_0464
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Igni_0306PFAM: Circadian clock protein KaiC, central region. (287 aa)
Igni_0325PFAM: protein of unknown function DUF124. (234 aa)
Igni_0326TIGRFAM: CRISPR-associated protein DxTHG motif. (523 aa)
Igni_0327TIGRFAM: CRISPR-associated RAMP protein, Cmr4 family; PFAM: protein of unknown function DUF324. (278 aa)
Igni_0328Hypothetical protein. (1025 aa)
Igni_0329Hypothetical protein. (354 aa)
Igni_0460TIGRFAM: CRISPR-associated RAMP protein, Cmr4 family; PFAM: protein of unknown function DUF324. (276 aa)
Igni_0461TIGRFAM: CRISPR-associated protein, Cmr5 family. (202 aa)
Igni_0462TIGRFAM: CRISPR-associated RAMP protein, Cmr6 family; PFAM: protein of unknown function DUF324. (306 aa)
Igni_0463Hypothetical protein. (983 aa)
Igni_0464Hypothetical protein. (324 aa)
Your Current Organism:
Ignicoccus hospitalis
NCBI taxonomy Id: 453591
Other names: I. hospitalis KIN4/I, Ignicoccus hospitalis DSM 18386, Ignicoccus hospitalis JCM 14125, Ignicoccus hospitalis KIN4/I, Ignicoccus hospitalis str. KIN4/I, Ignicoccus hospitalis strain KIN4/I
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