STRINGSTRING
Igni_0241 Igni_0241 Igni_0326 Igni_0326 Igni_0327 Igni_0327 Igni_0328 Igni_0328 Igni_0329 Igni_0329 Igni_0460 Igni_0460 Igni_0462 Igni_0462 Igni_0463 Igni_0463 Igni_0464 Igni_0464 Igni_0467 Igni_0467 Igni_0636 Igni_0636 Igni_0665 Igni_0665 Igni_1039 Igni_1039 cas1 cas1 Igni_1096 Igni_1096 Igni_1132 Igni_1132 cas1-2 cas1-2 cas2 cas2 Igni_1135 Igni_1135 Igni_1136 Igni_1136 Igni_1137 Igni_1137 Igni_1139 Igni_1139 Igni_1140 Igni_1140 Igni_1141 Igni_1141
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Igni_0241RecB-family nuclease-like protein. (145 aa)
Igni_0326TIGRFAM: CRISPR-associated protein DxTHG motif. (523 aa)
Igni_0327TIGRFAM: CRISPR-associated RAMP protein, Cmr4 family; PFAM: protein of unknown function DUF324. (278 aa)
Igni_0328Hypothetical protein. (1025 aa)
Igni_0329Hypothetical protein. (354 aa)
Igni_0460TIGRFAM: CRISPR-associated RAMP protein, Cmr4 family; PFAM: protein of unknown function DUF324. (276 aa)
Igni_0462TIGRFAM: CRISPR-associated RAMP protein, Cmr6 family; PFAM: protein of unknown function DUF324. (306 aa)
Igni_0463Hypothetical protein. (983 aa)
Igni_0464Hypothetical protein. (324 aa)
Igni_0467CRISPR-associated protein Cas4; CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Belongs to the CRISPR-associated exonuclease Cas4 family. (188 aa)
Igni_0636Hypothetical protein. (257 aa)
Igni_0665TIGRFAM: putative CRISPR-associated protein, APE2256 family. (243 aa)
Igni_1039Hypothetical protein. (509 aa)
cas1CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (310 aa)
Igni_1096Hypothetical protein. (292 aa)
Igni_1132TIGRFAM: CRISPR-associated protein, Csa1 family. (249 aa)
cas1-2CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (305 aa)
cas2CRISPR-associated protein Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (85 aa)
Igni_1135CRISPR-associated protein Cas4; CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Belongs to the CRISPR-associated exonuclease Cas4 family. (168 aa)
Igni_1136PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region. (261 aa)
Igni_1137TIGRFAM: CRISPR-associated helicase Cas3; PFAM: helicase domain protein; SMART: DEAD-like helicases-like. (543 aa)
Igni_1139TIGRFAM: CRISPR-associated protein Cas5. (293 aa)
Igni_1140TIGRFAM: CRISPR-associated regulatory protein, Csa2 family; CRISPR-associated autoregulator DevR family; PFAM: CRISPR-associated regulatory Csa2 family protein. (347 aa)
Igni_1141Hypothetical protein. (148 aa)
Your Current Organism:
Ignicoccus hospitalis
NCBI taxonomy Id: 453591
Other names: I. hospitalis KIN4/I, Ignicoccus hospitalis DSM 18386, Ignicoccus hospitalis JCM 14125, Ignicoccus hospitalis KIN4/I, Ignicoccus hospitalis str. KIN4/I, Ignicoccus hospitalis strain KIN4/I
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