5 items (Oryza sativa f. spontanea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0GQK0	Uncharacterized protein. (525 aa)
	A0A0E0GXN9	Uncharacterized protein. (107 aa)
	A0A0E0HS29	T-complex protein 1 subunit gamma. (558 aa)
	A0A0E0HSK6	Uncharacterized protein. (535 aa)
	A0A0E0J3K6	Uncharacterized protein. (222 aa)

Your Current Organism:

Oryza sativa f. spontanea

NCBI taxonomy Id: 4536
Other names: O. sativa f. spontanea, Oryza nivara, Oryza nivara S.D.Sharma & Shastry, Oryza sativa f. spontanea Roshev. nom. illeg.

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0GQK0	A0A0E0GXN9	Uncharacterized protein.	Uncharacterized protein.	0.994
A0A0E0GQK0	A0A0E0HS29	Uncharacterized protein.	T-complex protein 1 subunit gamma.	0.997
A0A0E0GQK0	A0A0E0HSK6	Uncharacterized protein.	Uncharacterized protein.	0.997
A0A0E0GQK0	A0A0E0J3K6	Uncharacterized protein.	Uncharacterized protein.	0.996
A0A0E0GXN9	A0A0E0GQK0	Uncharacterized protein.	Uncharacterized protein.	0.994
A0A0E0GXN9	A0A0E0HS29	Uncharacterized protein.	T-complex protein 1 subunit gamma.	0.993
A0A0E0GXN9	A0A0E0HSK6	Uncharacterized protein.	Uncharacterized protein.	0.995
A0A0E0GXN9	A0A0E0J3K6	Uncharacterized protein.	Uncharacterized protein.	0.994
A0A0E0HS29	A0A0E0GQK0	T-complex protein 1 subunit gamma.	Uncharacterized protein.	0.997
A0A0E0HS29	A0A0E0GXN9	T-complex protein 1 subunit gamma.	Uncharacterized protein.	0.993
A0A0E0HS29	A0A0E0HSK6	T-complex protein 1 subunit gamma.	Uncharacterized protein.	0.997
A0A0E0HS29	A0A0E0J3K6	T-complex protein 1 subunit gamma.	Uncharacterized protein.	0.996
A0A0E0HSK6	A0A0E0GQK0	Uncharacterized protein.	Uncharacterized protein.	0.997
A0A0E0HSK6	A0A0E0GXN9	Uncharacterized protein.	Uncharacterized protein.	0.995
A0A0E0HSK6	A0A0E0HS29	Uncharacterized protein.	T-complex protein 1 subunit gamma.	0.997
A0A0E0HSK6	A0A0E0J3K6	Uncharacterized protein.	Uncharacterized protein.	0.996
A0A0E0J3K6	A0A0E0GQK0	Uncharacterized protein.	Uncharacterized protein.	0.996
A0A0E0J3K6	A0A0E0GXN9	Uncharacterized protein.	Uncharacterized protein.	0.994
A0A0E0J3K6	A0A0E0HS29	Uncharacterized protein.	T-complex protein 1 subunit gamma.	0.996
A0A0E0J3K6	A0A0E0HSK6	Uncharacterized protein.	Uncharacterized protein.	0.996