(33 nodes) Mixed, incl. Preribosome, large subunit precursor, and Brix domain network (Oryza sativa f. spontanea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0FGP1	RNA helicase. (648 aa)
	A0A0E0FLM7	Uncharacterized protein. (115 aa)
	A0A0E0FM79	Brix domain-containing protein. (310 aa)
	A0A0E0FM81	TRASH domain-containing protein. (203 aa)
	A0A0E0FW82	Protein MAK16 homolog; Belongs to the MAK16 family. (313 aa)
	A0A0E0G960	Brix domain-containing protein. (331 aa)
	A0A0E0GP47	Uncharacterized protein. (125 aa)
	A0A0E0GSC5	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. (604 aa)
	A0A0E0H2R9	Uncharacterized protein. (253 aa)
	A0A0E0HDF7	Uncharacterized protein. (195 aa)
	A0A0E0HEW5	G domain-containing protein. (371 aa)
	A0A0E0HGK4	Brix domain-containing protein. (323 aa)
	A0A0E0HI20	Uncharacterized protein. (415 aa)
	A0A0E0HIK5	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits. (831 aa)
	A0A0E0HKM0	Brix domain-containing protein. (493 aa)
	A0A0E0HM46	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (676 aa)
	A0A0E0HRC3	Uncharacterized protein. (846 aa)
	A0A0E0I0H8	Uncharacterized protein. (303 aa)
	A0A0E0I3C0	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family. (431 aa)
	A0A0E0I5H4	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (188 aa)
	A0A0E0I5J4	Uncharacterized protein. (259 aa)
	A0A0E0I7F8	Uncharacterized protein. (463 aa)
	A0A0E0IAX8	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (529 aa)
	A0A0E0IBQ9	RRM domain-containing protein. (214 aa)
	A0A0E0IKH1	FtsJ domain-containing protein. (138 aa)
	A0A0E0INB9	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (796 aa)
	A0A0E0IPM2	Nuclear/nucleolar GTPase 2; GTPase involved in pre-60S ribosomal subunit maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. (535 aa)
	A0A0E0IU40	Uncharacterized protein. (156 aa)
	A0A0E0IUM9	Uncharacterized protein. (1140 aa)
	A0A0E0J198	TRASH domain-containing protein. (410 aa)
	A0A0E0J5R7	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (233 aa)
	A0A0E0J5S6	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (369 aa)
	A0A0E0J744	Uncharacterized protein. (669 aa)

Your Current Organism:

Oryza sativa f. spontanea

NCBI taxonomy Id: 4536
Other names: O. sativa f. spontanea, Oryza nivara, Oryza nivara S.D.Sharma & Shastry, Oryza sativa f. spontanea Roshev. nom. illeg.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0FGP1	A0A0E0FLM7	RNA helicase.	Uncharacterized protein.	0.950
A0A0E0FGP1	A0A0E0FM79	RNA helicase.	Brix domain-containing protein.	0.954
A0A0E0FGP1	A0A0E0FM81	RNA helicase.	TRASH domain-containing protein.	0.977
A0A0E0FGP1	A0A0E0FW82	RNA helicase.	Protein MAK16 homolog; Belongs to the MAK16 family.	0.608
A0A0E0FGP1	A0A0E0G960	RNA helicase.	Brix domain-containing protein.	0.944
A0A0E0FGP1	A0A0E0GP47	RNA helicase.	Uncharacterized protein.	0.974
A0A0E0FGP1	A0A0E0GSC5	RNA helicase.	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	0.990
A0A0E0FGP1	A0A0E0H2R9	RNA helicase.	Uncharacterized protein.	0.903
A0A0E0FGP1	A0A0E0HDF7	RNA helicase.	Uncharacterized protein.	0.940
A0A0E0FGP1	A0A0E0HEW5	RNA helicase.	G domain-containing protein.	0.950
A0A0E0FGP1	A0A0E0HGK4	RNA helicase.	Brix domain-containing protein.	0.954
A0A0E0FGP1	A0A0E0HI20	RNA helicase.	Uncharacterized protein.	0.903
A0A0E0FGP1	A0A0E0HIK5	RNA helicase.	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	0.988
A0A0E0FGP1	A0A0E0HKM0	RNA helicase.	Brix domain-containing protein.	0.781
A0A0E0FGP1	A0A0E0HM46	RNA helicase.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.972
A0A0E0FGP1	A0A0E0HRC3	RNA helicase.	Uncharacterized protein.	0.974
A0A0E0FGP1	A0A0E0I0H8	RNA helicase.	Uncharacterized protein.	0.993
A0A0E0FGP1	A0A0E0I3C0	RNA helicase.	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.	0.993
A0A0E0FGP1	A0A0E0I5H4	RNA helicase.	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.968
A0A0E0FGP1	A0A0E0I5J4	RNA helicase.	Uncharacterized protein.	0.946