(10 nodes) Mixed, incl. RSF complex, and Glycine rich nucleic binding domain network (Oryza sativa f. spontanea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0G1V2	Uncharacterized protein. (1040 aa)
	A0A0E0GG48	G-patch domain-containing protein. (384 aa)
	A0A0E0GV45	Uncharacterized protein. (698 aa)
	A0A0E0H9C7	MI domain-containing protein. (736 aa)
	A0A0E0HTS2	Uncharacterized protein. (189 aa)
	A0A0E0HXT8	DDT domain-containing protein. (777 aa)
	A0A0E0I491	Uncharacterized protein. (338 aa)
	A0A0E0I875	Uncharacterized protein. (285 aa)
	A0A0E0IDW9	Uncharacterized protein. (268 aa)
	A0A0E0IUD1	G-patch domain-containing protein. (113 aa)

Your Current Organism:

Oryza sativa f. spontanea

NCBI taxonomy Id: 4536
Other names: O. sativa f. spontanea, Oryza nivara, Oryza nivara S.D.Sharma & Shastry, Oryza sativa f. spontanea Roshev. nom. illeg.

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Export your current network:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0G1V2	A0A0E0GG48	Uncharacterized protein.	G-patch domain-containing protein.	0.896
A0A0E0G1V2	A0A0E0GV45	Uncharacterized protein.	Uncharacterized protein.	0.800
A0A0E0G1V2	A0A0E0H9C7	Uncharacterized protein.	MI domain-containing protein.	0.883
A0A0E0G1V2	A0A0E0HTS2	Uncharacterized protein.	Uncharacterized protein.	0.549
A0A0E0G1V2	A0A0E0HXT8	Uncharacterized protein.	DDT domain-containing protein.	0.806
A0A0E0G1V2	A0A0E0I875	Uncharacterized protein.	Uncharacterized protein.	0.917
A0A0E0G1V2	A0A0E0IDW9	Uncharacterized protein.	Uncharacterized protein.	0.624
A0A0E0GG48	A0A0E0G1V2	G-patch domain-containing protein.	Uncharacterized protein.	0.896
A0A0E0GG48	A0A0E0GV45	G-patch domain-containing protein.	Uncharacterized protein.	0.487
A0A0E0GG48	A0A0E0H9C7	G-patch domain-containing protein.	MI domain-containing protein.	0.934
A0A0E0GG48	A0A0E0HTS2	G-patch domain-containing protein.	Uncharacterized protein.	0.905
A0A0E0GG48	A0A0E0HXT8	G-patch domain-containing protein.	DDT domain-containing protein.	0.487
A0A0E0GG48	A0A0E0I491	G-patch domain-containing protein.	Uncharacterized protein.	0.896
A0A0E0GG48	A0A0E0I875	G-patch domain-containing protein.	Uncharacterized protein.	0.948
A0A0E0GG48	A0A0E0IDW9	G-patch domain-containing protein.	Uncharacterized protein.	0.623
A0A0E0GG48	A0A0E0IUD1	G-patch domain-containing protein.	G-patch domain-containing protein.	0.896
A0A0E0GV45	A0A0E0G1V2	Uncharacterized protein.	Uncharacterized protein.	0.800
A0A0E0GV45	A0A0E0GG48	Uncharacterized protein.	G-patch domain-containing protein.	0.487
A0A0E0GV45	A0A0E0I491	Uncharacterized protein.	Uncharacterized protein.	0.773
A0A0E0GV45	A0A0E0I875	Uncharacterized protein.	Uncharacterized protein.	0.677