(58 nodes) Mixed, incl. Lignin biosynthetic process, and 4-coumarate-CoA ligase activity network (Oryza sativa f. spontanea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0FEZ8	Uncharacterized protein. (452 aa)
	A0A0E0FLQ4	Uncharacterized protein. (460 aa)
	A0A0E0FNY8	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family. (502 aa)
	A0A0E0FNY9	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family. (514 aa)
	A0A0E0FRG2	Hydrolase_4 domain-containing protein. (387 aa)
	A0A0E0FV17	Uncharacterized protein. (481 aa)
	A0A0E0FX55	Uncharacterized protein. (1179 aa)
	A0A0E0G2F4	Uncharacterized protein. (554 aa)
	A0A0E0G2K0	Epimerase domain-containing protein. (344 aa)
	A0A0E0G2W8	Hydrolase_4 domain-containing protein. (343 aa)
	A0A0E0G9T0	Uncharacterized protein. (442 aa)
	A0A0E0G9Y4	Phenylalanine ammonia-lyase. (701 aa)
	A0A0E0G9Y7	Phenylalanine ammonia-lyase. (724 aa)
	A0A0E0GBN2	Uncharacterized protein. (535 aa)
	A0A0E0GEM1	Epimerase domain-containing protein. (338 aa)
	A0A0E0GFY1	Uncharacterized protein; Belongs to the cytochrome P450 family. (519 aa)
	A0A0E0GGX7	Uncharacterized protein. (583 aa)
	A0A0E0GX08	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family. (357 aa)
	A0A0E0GXQ8	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family. (338 aa)
	A0A0E0GZ07	Uncharacterized protein. (555 aa)
	A0A0E0GZ59	Hydrolase_4 domain-containing protein. (351 aa)
	A0A0E0H2S4	Uncharacterized protein. (442 aa)
	A0A0E0H385	Phenylalanine ammonia-lyase. (707 aa)
	A0A0E0H500	Uncharacterized protein; Belongs to the cytochrome P450 family. (530 aa)
	A0A0E0HBW2	Epimerase domain-containing protein. (347 aa)
	A0A0E0HC80	Hydrolase_4 domain-containing protein. (363 aa)
	A0A0E0HCK8	Uncharacterized protein. (262 aa)
	A0A0E0HGA5	Uncharacterized protein; Belongs to the cytochrome P450 family. (512 aa)
	A0A0E0HLM2	AP2/ERF domain-containing protein. (496 aa)
	A0A0E0HPZ7	Uncharacterized protein. (445 aa)
	A0A0E0HPZ9	Uncharacterized protein. (436 aa)
	A0A0E0HQ01	Uncharacterized protein. (466 aa)
	A0A0E0HT11	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family. (526 aa)
	A0A0E0HUF6	Uncharacterized protein. (556 aa)
	A0A0E0HVW6	Phenylalanine ammonia-lyase. (714 aa)
	A0A0E0HYY2	Uncharacterized protein. (160 aa)
	A0A0E0HZ44	AMP-binding domain-containing protein. (476 aa)
	A0A0E0I764	Uncharacterized protein. (591 aa)
	A0A0E0I7E4	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family. (346 aa)
	A0A0E0I943	Uncharacterized protein. (565 aa)
	A0A0E0I9L2	Epimerase domain-containing protein. (361 aa)
	A0A0E0IBD0	Uncharacterized protein; Belongs to the cytochrome P450 family. (532 aa)
	A0A0E0IBD1	Uncharacterized protein; Belongs to the cytochrome P450 family. (359 aa)
	A0A0E0ICJ4	Epimerase domain-containing protein. (375 aa)
	A0A0E0ICP0	Uncharacterized protein. (539 aa)
	A0A0E0IDT3	Uncharacterized protein. (252 aa)
	A0A0E0IDT5	Uncharacterized protein. (292 aa)
	A0A0E0IFB7	Uncharacterized protein. (434 aa)
	A0A0E0IH31	Epimerase domain-containing protein. (328 aa)
	A0A0E0IJM1	Epimerase domain-containing protein. (344 aa)
	A0A0E0IJP4	Uncharacterized protein. (442 aa)
	A0A0E0INB1	Uncharacterized protein. (443 aa)
	A0A0E0INB2	Uncharacterized protein; Belongs to the cytochrome P450 family. (490 aa)
	A0A0E0IZ29	Uncharacterized protein. (215 aa)
	A0A0E0J2K9	Uncharacterized protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family. (413 aa)
	A0A0E0J2L1	Uncharacterized protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family. (375 aa)
	A0A0E0J9R9	Hydrolase_4 domain-containing protein. (419 aa)
	A0A0E0JAS3	Uncharacterized protein. (564 aa)

Your Current Organism:

Oryza sativa f. spontanea

NCBI taxonomy Id: 4536
Other names: O. sativa f. spontanea, Oryza nivara, Oryza nivara S.D.Sharma & Shastry, Oryza sativa f. spontanea Roshev. nom. illeg.

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0FEZ8	A0A0E0FNY8	Uncharacterized protein.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.400
A0A0E0FEZ8	A0A0E0FRG2	Uncharacterized protein.	Hydrolase_4 domain-containing protein.	0.873
A0A0E0FEZ8	A0A0E0FV17	Uncharacterized protein.	Uncharacterized protein.	0.767
A0A0E0FEZ8	A0A0E0FX55	Uncharacterized protein.	Uncharacterized protein.	0.883
A0A0E0FEZ8	A0A0E0G2F4	Uncharacterized protein.	Uncharacterized protein.	0.688
A0A0E0FEZ8	A0A0E0G2K0	Uncharacterized protein.	Epimerase domain-containing protein.	0.523
A0A0E0FEZ8	A0A0E0G2W8	Uncharacterized protein.	Hydrolase_4 domain-containing protein.	0.872
A0A0E0FEZ8	A0A0E0GBN2	Uncharacterized protein.	Uncharacterized protein.	0.889
A0A0E0FEZ8	A0A0E0GEM1	Uncharacterized protein.	Epimerase domain-containing protein.	0.523
A0A0E0FEZ8	A0A0E0GGX7	Uncharacterized protein.	Uncharacterized protein.	0.882
A0A0E0FEZ8	A0A0E0GZ07	Uncharacterized protein.	Uncharacterized protein.	0.870
A0A0E0FEZ8	A0A0E0GZ59	Uncharacterized protein.	Hydrolase_4 domain-containing protein.	0.854
A0A0E0FEZ8	A0A0E0HBW2	Uncharacterized protein.	Epimerase domain-containing protein.	0.523
A0A0E0FEZ8	A0A0E0HC80	Uncharacterized protein.	Hydrolase_4 domain-containing protein.	0.873
A0A0E0FEZ8	A0A0E0HCK8	Uncharacterized protein.	Uncharacterized protein.	0.767
A0A0E0FEZ8	A0A0E0HGA5	Uncharacterized protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.667
A0A0E0FEZ8	A0A0E0HLM2	Uncharacterized protein.	AP2/ERF domain-containing protein.	0.697
A0A0E0FEZ8	A0A0E0HPZ7	Uncharacterized protein.	Uncharacterized protein.	0.769
A0A0E0FEZ8	A0A0E0HPZ9	Uncharacterized protein.	Uncharacterized protein.	0.828
A0A0E0FEZ8	A0A0E0HQ01	Uncharacterized protein.	Uncharacterized protein.	0.590