(14 nodes) Mixed, incl. UDP-glucuronate metabolic process, and UDP-glucose 4-epimerase network (Oryza sativa f. spontanea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0FLW7	Uncharacterized protein. (1167 aa)
	A0A0E0FVH4	NAD(P)-bd_dom domain-containing protein. (410 aa)
	A0A0E0FZG3	Epimerase domain-containing protein. (398 aa)
	A0A0E0G059	Uncharacterized protein. (440 aa)
	A0A0E0G664	Epimerase domain-containing protein. (281 aa)
	A0A0E0GU11	UDP-glucose 6-dehydrogenase. (464 aa)
	A0A0E0HJC2	UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. (354 aa)
	A0A0E0HUY3	Uncharacterized protein. (616 aa)
	A0A0E0HX63	GalP_UDP_transf domain-containing protein. (351 aa)
	A0A0E0IB30	NAD(P)-bd_dom domain-containing protein. (408 aa)
	A0A0E0IM11	Epimerase domain-containing protein. (498 aa)
	A0A0E0IMM5	UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. (394 aa)
	A0A0E0J9V2	UDP-glucose 6-dehydrogenase. (480 aa)
	A0A0E0J9V3	UDP-glucose 6-dehydrogenase. (480 aa)

Your Current Organism:

Oryza sativa f. spontanea

NCBI taxonomy Id: 4536
Other names: O. sativa f. spontanea, Oryza nivara, Oryza nivara S.D.Sharma & Shastry, Oryza sativa f. spontanea Roshev. nom. illeg.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0FLW7	A0A0E0FVH4	Uncharacterized protein.	NAD(P)-bd_dom domain-containing protein.	0.682
A0A0E0FLW7	A0A0E0FZG3	Uncharacterized protein.	Epimerase domain-containing protein.	0.715
A0A0E0FLW7	A0A0E0G059	Uncharacterized protein.	Uncharacterized protein.	0.921
A0A0E0FLW7	A0A0E0GU11	Uncharacterized protein.	UDP-glucose 6-dehydrogenase.	0.956
A0A0E0FLW7	A0A0E0HJC2	Uncharacterized protein.	UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.	0.937
A0A0E0FLW7	A0A0E0HUY3	Uncharacterized protein.	Uncharacterized protein.	0.913
A0A0E0FLW7	A0A0E0HX63	Uncharacterized protein.	GalP_UDP_transf domain-containing protein.	0.857
A0A0E0FLW7	A0A0E0IB30	Uncharacterized protein.	NAD(P)-bd_dom domain-containing protein.	0.937
A0A0E0FLW7	A0A0E0IM11	Uncharacterized protein.	Epimerase domain-containing protein.	0.559
A0A0E0FLW7	A0A0E0IMM5	Uncharacterized protein.	UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.	0.937
A0A0E0FLW7	A0A0E0J9V2	Uncharacterized protein.	UDP-glucose 6-dehydrogenase.	0.941
A0A0E0FLW7	A0A0E0J9V3	Uncharacterized protein.	UDP-glucose 6-dehydrogenase.	0.941
A0A0E0FVH4	A0A0E0FLW7	NAD(P)-bd_dom domain-containing protein.	Uncharacterized protein.	0.682
A0A0E0FVH4	A0A0E0FZG3	NAD(P)-bd_dom domain-containing protein.	Epimerase domain-containing protein.	0.921
A0A0E0FVH4	A0A0E0G059	NAD(P)-bd_dom domain-containing protein.	Uncharacterized protein.	0.457
A0A0E0FVH4	A0A0E0G664	NAD(P)-bd_dom domain-containing protein.	Epimerase domain-containing protein.	0.673
A0A0E0FVH4	A0A0E0GU11	NAD(P)-bd_dom domain-containing protein.	UDP-glucose 6-dehydrogenase.	0.943
A0A0E0FVH4	A0A0E0HJC2	NAD(P)-bd_dom domain-containing protein.	UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.	0.655
A0A0E0FVH4	A0A0E0HUY3	NAD(P)-bd_dom domain-containing protein.	Uncharacterized protein.	0.912
A0A0E0FVH4	A0A0E0HX63	NAD(P)-bd_dom domain-containing protein.	GalP_UDP_transf domain-containing protein.	0.677