87 items (Oryza sativa f. spontanea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0FH47	Tudor domain-containing protein. (1534 aa)
	A0A0E0FJM8	Uncharacterized protein. (308 aa)
	A0A0E0FJT6	Uncharacterized protein. (241 aa)
	A0A0E0FN19	SnoaL-like domain-containing protein. (293 aa)
	A0A0E0FQW5	Uncharacterized protein. (1865 aa)
	A0A0E0FRF8	Uncharacterized protein. (348 aa)
	A0A0E0FSU7	Uncharacterized protein. (102 aa)
	A0A0E0FU18	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (938 aa)
	A0A0E0FVX0	Uncharacterized protein. (474 aa)
	A0A0E0FWE3	Uncharacterized protein. (664 aa)
	A0A0E0FX06	Rhodanese domain-containing protein. (601 aa)
	A0A0E0FX11	Uncharacterized protein. (511 aa)
	A0A0E0FX25	Uncharacterized protein. (949 aa)
	A0A0E0G0K4	DUF1995 domain-containing protein. (338 aa)
	A0A0E0G127	Uncharacterized protein. (1035 aa)
	A0A0E0G1R7	CID domain-containing protein. (1385 aa)
	A0A0E0G367	Uncharacterized protein. (1916 aa)
	A0A0E0G390	C-CAP/cofactor C-like domain-containing protein. (593 aa)
	A0A0E0G6E9	Uncharacterized protein. (887 aa)
	A0A0E0G7K8	Uncharacterized protein. (442 aa)
	A0A0E0G7N7	Uncharacterized protein. (787 aa)
	A0A0E0G8J7	Uncharacterized protein; Belongs to the terpene synthase family. (839 aa)
	A0A0E0G8K9	Uncharacterized protein; Belongs to the terpene synthase family. (734 aa)
	A0A0E0G954	Uncharacterized protein. (246 aa)
	A0A0E0GC02	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family. (2177 aa)
	A0A0E0GDM5	Uncharacterized protein. (915 aa)
	A0A0E0GGC7	Uncharacterized protein. (115 aa)
	A0A0E0GGJ0	Uncharacterized protein. (701 aa)
	A0A0E0GI39	TPR_REGION domain-containing protein. (707 aa)
	A0A0E0GJ98	Uncharacterized protein. (1176 aa)
	A0A0E0GKE8	Uncharacterized protein. (445 aa)
	A0A0E0GLE4	Uncharacterized protein. (960 aa)
	A0A0E0GLN0	Uncharacterized protein. (432 aa)
	A0A0E0GLN4	Uncharacterized protein. (244 aa)
	A0A0E0GMC3	CW-type domain-containing protein. (1546 aa)
	A0A0E0GMG6	Fmp27_GFWDK domain-containing protein. (2577 aa)
	A0A0E0GMM7	Uncharacterized protein. (726 aa)
	A0A0E0GPT7	Uncharacterized protein. (468 aa)
	A0A0E0GRV9	Fmp27_GFWDK domain-containing protein. (2628 aa)
	A0A0E0GRY2	HECT domain-containing protein. (1123 aa)
	A0A0E0GSP0	Uncharacterized protein. (1267 aa)
	A0A0E0GT03	Uncharacterized protein. (337 aa)
	A0A0E0GUM5	Uncharacterized protein. (599 aa)
	A0A0E0GZV3	Uncharacterized protein. (183 aa)
	A0A0E0H123	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1180 aa)
	A0A0E0H2B9	Myb-like domain-containing protein. (849 aa)
	A0A0E0H3U0	Uncharacterized protein. (519 aa)
	A0A0E0H4E9	Lgl_C domain-containing protein. (984 aa)
	A0A0E0H6N6	RING-type domain-containing protein. (667 aa)
	A0A0E0H8E6	Uncharacterized protein. (1193 aa)
	A0A0E0H907	Uncharacterized protein. (654 aa)
	A0A0E0H9X8	HECT domain-containing protein. (1031 aa)
	A0A0E0HA41	Uncharacterized protein. (229 aa)
	A0A0E0HD47	Uncharacterized protein. (1254 aa)
	A0A0E0HEW4	Uncharacterized protein. (606 aa)
	A0A0E0HIE8	Uncharacterized protein. (1855 aa)
	A0A0E0HJP2	Uncharacterized protein. (1018 aa)
	A0A0E0HLV0	C2 tensin-type domain-containing protein. (552 aa)
	A0A0E0HLY2	Uncharacterized protein. (741 aa)
	A0A0E0HM78	Uncharacterized protein. (1437 aa)
	A0A0E0HMH9	Uncharacterized protein. (913 aa)
	A0A0E0HMQ6	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1287 aa)
	A0A0E0HNG3	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (944 aa)
	A0A0E0HTG9	C-CAP/cofactor C-like domain-containing protein. (581 aa)
	A0A0E0HV33	Uncharacterized protein. (239 aa)
	A0A0E0HY81	Uncharacterized protein. (246 aa)
	A0A0E0I2V0	DUF4091 domain-containing protein. (679 aa)
	A0A0E0I6U4	Uncharacterized protein. (358 aa)
	A0A0E0IC19	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (888 aa)
	A0A0E0IEE9	SBP-type domain-containing protein. (1140 aa)
	A0A0E0IF25	Uncharacterized protein. (374 aa)
	A0A0E0IF94	Uncharacterized protein. (741 aa)
	A0A0E0IGD6	KIX_2 domain-containing protein. (1230 aa)
	A0A0E0ILK1	Uncharacterized protein. (3645 aa)
	A0A0E0IMD8	BZIP domain-containing protein. (375 aa)
	A0A0E0IME5	Uncharacterized protein. (789 aa)
	A0A0E0IME8	Uncharacterized protein. (612 aa)
	A0A0E0IPG2	Clu domain-containing protein. (1830 aa)
	A0A0E0IQ18	Uncharacterized protein. (511 aa)
	A0A0E0IRG5	Uncharacterized protein. (1031 aa)
	A0A0E0ITG1	TPR_REGION domain-containing protein. (727 aa)
	A0A0E0IUT6	Xpo1 domain-containing protein. (1132 aa)
	A0A0E0IWJ8	F-box domain-containing protein. (959 aa)
	A0A0E0IYQ7	Uncharacterized protein. (428 aa)
	A0A0E0J2J8	Uncharacterized protein. (1101 aa)
	A0A0E0J336	Uncharacterized protein. (627 aa)
	A0A0E0J5E0	Uncharacterized protein. (697 aa)

Your Current Organism:

Oryza sativa f. spontanea

NCBI taxonomy Id: 4536
Other names: O. sativa f. spontanea, Oryza nivara, Oryza nivara S.D.Sharma & Shastry, Oryza sativa f. spontanea Roshev. nom. illeg.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0FH47	A0A0E0G367	Tudor domain-containing protein.	Uncharacterized protein.	0.418
A0A0E0FH47	A0A0E0G954	Tudor domain-containing protein.	Uncharacterized protein.	0.424
A0A0E0FH47	A0A0E0H8E6	Tudor domain-containing protein.	Uncharacterized protein.	0.430
A0A0E0FH47	A0A0E0HD47	Tudor domain-containing protein.	Uncharacterized protein.	0.443
A0A0E0FH47	A0A0E0HJP2	Tudor domain-containing protein.	Uncharacterized protein.	0.512
A0A0E0FH47	A0A0E0HLY2	Tudor domain-containing protein.	Uncharacterized protein.	0.449
A0A0E0FH47	A0A0E0HMH9	Tudor domain-containing protein.	Uncharacterized protein.	0.461
A0A0E0FH47	A0A0E0IEE9	Tudor domain-containing protein.	SBP-type domain-containing protein.	0.435
A0A0E0FH47	A0A0E0IF25	Tudor domain-containing protein.	Uncharacterized protein.	0.455
A0A0E0FJT6	A0A0E0FRF8	Uncharacterized protein.	Uncharacterized protein.	0.440
A0A0E0FN19	A0A0E0HM78	SnoaL-like domain-containing protein.	Uncharacterized protein.	0.403
A0A0E0FQW5	A0A0E0FX11	Uncharacterized protein.	Uncharacterized protein.	0.423
A0A0E0FQW5	A0A0E0FX25	Uncharacterized protein.	Uncharacterized protein.	0.431
A0A0E0FQW5	A0A0E0G367	Uncharacterized protein.	Uncharacterized protein.	0.610
A0A0E0FQW5	A0A0E0GKE8	Uncharacterized protein.	Uncharacterized protein.	0.430
A0A0E0FQW5	A0A0E0GLE4	Uncharacterized protein.	Uncharacterized protein.	0.472
A0A0E0FQW5	A0A0E0GMC3	Uncharacterized protein.	CW-type domain-containing protein.	0.533
A0A0E0FQW5	A0A0E0GMG6	Uncharacterized protein.	Fmp27_GFWDK domain-containing protein.	0.402
A0A0E0FQW5	A0A0E0GRV9	Uncharacterized protein.	Fmp27_GFWDK domain-containing protein.	0.457
A0A0E0FQW5	A0A0E0HLV0	Uncharacterized protein.	C2 tensin-type domain-containing protein.	0.405