10 items (Oryza sativa f. spontanea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0FEY1	Uncharacterized protein. (228 aa)
	A0A0E0FHD6	Uncharacterized protein. (1144 aa)
	A0A0E0GDE9	Uncharacterized protein. (549 aa)
	A0A0E0GJL0	Lactamase_B domain-containing protein. (649 aa)
	A0A0E0GKU3	Uncharacterized protein. (795 aa)
	A0A0E0GLE9	TPR_REGION domain-containing protein. (620 aa)
	A0A0E0HIU0	Uncharacterized protein. (762 aa)
	A0A0E0HNP6	3-ketoacyl-CoA synthase. (492 aa)
	A0A0E0IIZ9	Uncharacterized protein. (666 aa)
	A0A0E0IYS6	Uncharacterized protein. (488 aa)

Your Current Organism:

Oryza sativa f. spontanea

NCBI taxonomy Id: 4536
Other names: O. sativa f. spontanea, Oryza nivara, Oryza nivara S.D.Sharma & Shastry, Oryza sativa f. spontanea Roshev. nom. illeg.

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0FEY1	A0A0E0GDE9	Uncharacterized protein.	Uncharacterized protein.	0.669
A0A0E0FEY1	A0A0E0GJL0	Uncharacterized protein.	Lactamase_B domain-containing protein.	0.967
A0A0E0FEY1	A0A0E0GKU3	Uncharacterized protein.	Uncharacterized protein.	0.971
A0A0E0FEY1	A0A0E0GLE9	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.577
A0A0E0FEY1	A0A0E0HIU0	Uncharacterized protein.	Uncharacterized protein.	0.705
A0A0E0FEY1	A0A0E0HNP6	Uncharacterized protein.	3-ketoacyl-CoA synthase.	0.705
A0A0E0FEY1	A0A0E0IIZ9	Uncharacterized protein.	Uncharacterized protein.	0.968
A0A0E0FEY1	A0A0E0IYS6	Uncharacterized protein.	Uncharacterized protein.	0.981
A0A0E0FHD6	A0A0E0GDE9	Uncharacterized protein.	Uncharacterized protein.	0.669
A0A0E0FHD6	A0A0E0GJL0	Uncharacterized protein.	Lactamase_B domain-containing protein.	0.973
A0A0E0FHD6	A0A0E0GKU3	Uncharacterized protein.	Uncharacterized protein.	0.971
A0A0E0FHD6	A0A0E0GLE9	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.577
A0A0E0FHD6	A0A0E0HIU0	Uncharacterized protein.	Uncharacterized protein.	0.705
A0A0E0FHD6	A0A0E0HNP6	Uncharacterized protein.	3-ketoacyl-CoA synthase.	0.705
A0A0E0FHD6	A0A0E0IIZ9	Uncharacterized protein.	Uncharacterized protein.	0.968
A0A0E0FHD6	A0A0E0IYS6	Uncharacterized protein.	Uncharacterized protein.	0.981
A0A0E0GDE9	A0A0E0FEY1	Uncharacterized protein.	Uncharacterized protein.	0.669
A0A0E0GDE9	A0A0E0FHD6	Uncharacterized protein.	Uncharacterized protein.	0.669
A0A0E0GDE9	A0A0E0GJL0	Uncharacterized protein.	Lactamase_B domain-containing protein.	0.714
A0A0E0GDE9	A0A0E0GKU3	Uncharacterized protein.	Uncharacterized protein.	0.787