10 items (Oryza sativa f. spontanea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0FQG5	Uncharacterized protein. (69 aa)
	A0A0E0G8B0	Uncharacterized protein. (67 aa)
	A0A0E0GGJ7	Uncharacterized protein. (108 aa)
	A0A0E0H3A2	Knot1 domain-containing protein; Belongs to the DEFL family. (81 aa)
	A0A0E0HDH9	DYW_deaminase domain-containing protein. (193 aa)
	A0A0E0HRG7	Uncharacterized protein. (77 aa)
	A0A0E0HRN2	Uncharacterized protein. (180 aa)
	A0A0E0HUZ1	Uncharacterized protein. (100 aa)
	A0A0E0IL16	NPH3 domain-containing protein; Belongs to the NPH3 family. (151 aa)
	A0A0E0J1T1	Uncharacterized protein. (73 aa)

Your Current Organism:

Oryza sativa f. spontanea

NCBI taxonomy Id: 4536
Other names: O. sativa f. spontanea, Oryza nivara, Oryza nivara S.D.Sharma & Shastry, Oryza sativa f. spontanea Roshev. nom. illeg.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0FQG5	A0A0E0G8B0	Uncharacterized protein.	Uncharacterized protein.	0.450
A0A0E0FQG5	A0A0E0GGJ7	Uncharacterized protein.	Uncharacterized protein.	0.531
A0A0E0FQG5	A0A0E0H3A2	Uncharacterized protein.	Knot1 domain-containing protein; Belongs to the DEFL family.	0.484
A0A0E0FQG5	A0A0E0HDH9	Uncharacterized protein.	DYW_deaminase domain-containing protein.	0.526
A0A0E0FQG5	A0A0E0HRN2	Uncharacterized protein.	Uncharacterized protein.	0.476
A0A0E0FQG5	A0A0E0HUZ1	Uncharacterized protein.	Uncharacterized protein.	0.465
A0A0E0FQG5	A0A0E0IL16	Uncharacterized protein.	NPH3 domain-containing protein; Belongs to the NPH3 family.	0.536
A0A0E0G8B0	A0A0E0FQG5	Uncharacterized protein.	Uncharacterized protein.	0.450
A0A0E0G8B0	A0A0E0GGJ7	Uncharacterized protein.	Uncharacterized protein.	0.419
A0A0E0G8B0	A0A0E0H3A2	Uncharacterized protein.	Knot1 domain-containing protein; Belongs to the DEFL family.	0.541
A0A0E0G8B0	A0A0E0HRG7	Uncharacterized protein.	Uncharacterized protein.	0.429
A0A0E0G8B0	A0A0E0HRN2	Uncharacterized protein.	Uncharacterized protein.	0.443
A0A0E0G8B0	A0A0E0IL16	Uncharacterized protein.	NPH3 domain-containing protein; Belongs to the NPH3 family.	0.485
A0A0E0G8B0	A0A0E0J1T1	Uncharacterized protein.	Uncharacterized protein.	0.446
A0A0E0GGJ7	A0A0E0FQG5	Uncharacterized protein.	Uncharacterized protein.	0.531
A0A0E0GGJ7	A0A0E0G8B0	Uncharacterized protein.	Uncharacterized protein.	0.419
A0A0E0GGJ7	A0A0E0H3A2	Uncharacterized protein.	Knot1 domain-containing protein; Belongs to the DEFL family.	0.478
A0A0E0GGJ7	A0A0E0HDH9	Uncharacterized protein.	DYW_deaminase domain-containing protein.	0.501
A0A0E0GGJ7	A0A0E0HRG7	Uncharacterized protein.	Uncharacterized protein.	0.527
A0A0E0GGJ7	A0A0E0HRN2	Uncharacterized protein.	Uncharacterized protein.	0.471