(13 nodes) Parallel beta-helix repeats, and Amb_all network (Oryza sativa f. spontanea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0FGX4	Uncharacterized protein. (450 aa)
	A0A0E0FJI8	Pectinesterase. (582 aa)
	A0A0E0FPN9	Uncharacterized protein. (397 aa)
	A0A0E0FPW9	Pectinesterase. (330 aa)
	A0A0E0FUA4	Pectinesterase; Acts in the modification of cell walls via demethylesterification of cell wall pectin. (546 aa)
	A0A0E0FWU4	Uncharacterized protein. (408 aa)
	A0A0E0GXE2	Pectate lyase. (471 aa)
	A0A0E0HLW4	Uncharacterized protein. (698 aa)
	A0A0E0I3I5	Pectinesterase. (405 aa)
	A0A0E0I9R0	Pectate lyase. (648 aa)
	A0A0E0ISW9	Pectate lyase. (491 aa)
	A0A0E0J0A6	Uncharacterized protein. (814 aa)
	A0A0E0J0A7	Uncharacterized protein. (407 aa)

Your Current Organism:

Oryza sativa f. spontanea

NCBI taxonomy Id: 4536
Other names: O. sativa f. spontanea, Oryza nivara, Oryza nivara S.D.Sharma & Shastry, Oryza sativa f. spontanea Roshev. nom. illeg.

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0FGX4	A0A0E0FJI8	Uncharacterized protein.	Pectinesterase.	0.906
A0A0E0FGX4	A0A0E0FPW9	Uncharacterized protein.	Pectinesterase.	0.906
A0A0E0FGX4	A0A0E0FUA4	Uncharacterized protein.	Pectinesterase; Acts in the modification of cell walls via demethylesterification of cell wall pectin.	0.912
A0A0E0FGX4	A0A0E0FWU4	Uncharacterized protein.	Uncharacterized protein.	0.734
A0A0E0FGX4	A0A0E0GXE2	Uncharacterized protein.	Pectate lyase.	0.923
A0A0E0FGX4	A0A0E0HLW4	Uncharacterized protein.	Uncharacterized protein.	0.730
A0A0E0FGX4	A0A0E0I3I5	Uncharacterized protein.	Pectinesterase.	0.917
A0A0E0FGX4	A0A0E0I9R0	Uncharacterized protein.	Pectate lyase.	0.924
A0A0E0FGX4	A0A0E0ISW9	Uncharacterized protein.	Pectate lyase.	0.930
A0A0E0FGX4	A0A0E0J0A6	Uncharacterized protein.	Uncharacterized protein.	0.747
A0A0E0FGX4	A0A0E0J0A7	Uncharacterized protein.	Uncharacterized protein.	0.880
A0A0E0FJI8	A0A0E0FGX4	Pectinesterase.	Uncharacterized protein.	0.906
A0A0E0FJI8	A0A0E0FPN9	Pectinesterase.	Uncharacterized protein.	0.906
A0A0E0FJI8	A0A0E0FWU4	Pectinesterase.	Uncharacterized protein.	0.908
A0A0E0FJI8	A0A0E0GXE2	Pectinesterase.	Pectate lyase.	0.907
A0A0E0FJI8	A0A0E0HLW4	Pectinesterase.	Uncharacterized protein.	0.780
A0A0E0FJI8	A0A0E0I9R0	Pectinesterase.	Pectate lyase.	0.904
A0A0E0FJI8	A0A0E0ISW9	Pectinesterase.	Pectate lyase.	0.907
A0A0E0FJI8	A0A0E0J0A6	Pectinesterase.	Uncharacterized protein.	0.782
A0A0E0FJI8	A0A0E0J0A7	Pectinesterase.	Uncharacterized protein.	0.905