(5 nodes) Mixed, incl. tRNA transcription, and RNA polymerase, subunit omega/Rpo6/RPB6 network (Oryza sativa f. spontanea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0G052	RPOL4c domain-containing protein. (142 aa)
	A0A0E0GQ58	Uncharacterized protein. (142 aa)
	A0A0E0HX74	RNA_pol_L_2 domain-containing protein. (120 aa)
	A0A0E0IG60	RPOLD domain-containing protein. (330 aa)
	A0A0E0J7I4	Uncharacterized protein. (165 aa)

Your Current Organism:

Oryza sativa f. spontanea

NCBI taxonomy Id: 4536
Other names: O. sativa f. spontanea, Oryza nivara, Oryza nivara S.D.Sharma & Shastry, Oryza sativa f. spontanea Roshev. nom. illeg.

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... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0G052	A0A0E0GQ58	RPOL4c domain-containing protein.	Uncharacterized protein.	0.994
A0A0E0G052	A0A0E0HX74	RPOL4c domain-containing protein.	RNA_pol_L_2 domain-containing protein.	0.999
A0A0E0G052	A0A0E0IG60	RPOL4c domain-containing protein.	RPOLD domain-containing protein.	0.998
A0A0E0G052	A0A0E0J7I4	RPOL4c domain-containing protein.	Uncharacterized protein.	0.991
A0A0E0GQ58	A0A0E0G052	Uncharacterized protein.	RPOL4c domain-containing protein.	0.994
A0A0E0GQ58	A0A0E0HX74	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.994
A0A0E0GQ58	A0A0E0IG60	Uncharacterized protein.	RPOLD domain-containing protein.	0.997
A0A0E0GQ58	A0A0E0J7I4	Uncharacterized protein.	Uncharacterized protein.	0.995
A0A0E0HX74	A0A0E0G052	RNA_pol_L_2 domain-containing protein.	RPOL4c domain-containing protein.	0.999
A0A0E0HX74	A0A0E0GQ58	RNA_pol_L_2 domain-containing protein.	Uncharacterized protein.	0.994
A0A0E0HX74	A0A0E0IG60	RNA_pol_L_2 domain-containing protein.	RPOLD domain-containing protein.	0.999
A0A0E0HX74	A0A0E0J7I4	RNA_pol_L_2 domain-containing protein.	Uncharacterized protein.	0.995
A0A0E0IG60	A0A0E0G052	RPOLD domain-containing protein.	RPOL4c domain-containing protein.	0.998
A0A0E0IG60	A0A0E0GQ58	RPOLD domain-containing protein.	Uncharacterized protein.	0.997
A0A0E0IG60	A0A0E0HX74	RPOLD domain-containing protein.	RNA_pol_L_2 domain-containing protein.	0.999
A0A0E0IG60	A0A0E0J7I4	RPOLD domain-containing protein.	Uncharacterized protein.	0.997
A0A0E0J7I4	A0A0E0G052	Uncharacterized protein.	RPOL4c domain-containing protein.	0.991
A0A0E0J7I4	A0A0E0GQ58	Uncharacterized protein.	Uncharacterized protein.	0.995
A0A0E0J7I4	A0A0E0HX74	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.995
A0A0E0J7I4	A0A0E0IG60	Uncharacterized protein.	RPOLD domain-containing protein.	0.997