(29 nodes) Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay network (Oryza sativa f. spontanea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0J937	Uncharacterized protein. (160 aa)
	A0A0E0G1Y4	Uncharacterized protein; Belongs to the DEAD box helicase family. (401 aa)
	A0A0E0GA20	Uncharacterized protein. (1190 aa)
	A0A0E0GA90	Uncharacterized protein. (941 aa)
	A0A0E0GF37	Uncharacterized protein. (1137 aa)
	A0A0E0GK49	Mago-bind domain-containing protein. (218 aa)
	A0A0E0GMC1	MIF4G domain-containing protein. (914 aa)
	A0A0E0GVE8	RRM domain-containing protein. (217 aa)
	A0A0E0GW47	Uncharacterized protein. (478 aa)
	A0A0E0H177	Smg4_UPF3 domain-containing protein. (512 aa)
	A0A0E0H2N7	Uncharacterized protein. (476 aa)
	A0A0E0H3B3	Upf2 domain-containing protein. (83 aa)
	A0A0E0H3B4	Uncharacterized protein. (542 aa)
	A0A0E0H3F6	Uncharacterized protein. (946 aa)
	A0A0E0H953	RRM domain-containing protein. (247 aa)
	A0A0E0HH99	Btz domain-containing protein. (707 aa)
	A0A0E0I131	Helicase ATP-binding domain-containing protein. (1277 aa)
	A0A0E0I6D8	Uncharacterized protein. (156 aa)
	A0A0E0IA03	Uncharacterized protein. (1013 aa)
	A0A0E0IW20	Uncharacterized protein. (1638 aa)
	A0A0E0J5E1	Uncharacterized protein. (1398 aa)
	A0A0E0G1L4	Uncharacterized protein. (1377 aa)
	A0A0E0FXF2	Uncharacterized protein; Belongs to the DEAD box helicase family. (663 aa)
	A0A0E0FSC1	Btz domain-containing protein. (672 aa)
	A0A0E0FQ03	Uncharacterized protein; Belongs to the DEAD box helicase family. (394 aa)
	A0A0E0FP34	Btz domain-containing protein. (701 aa)
	A0A0E0FMZ6	Uncharacterized protein; Belongs to the DEAD box helicase family. (792 aa)
	A0A0E0FHN2	Uncharacterized protein; Belongs to the DEAD box helicase family. (479 aa)
	A0A0E0FGW7	Uncharacterized protein; Belongs to the DEAD box helicase family. (700 aa)

Your Current Organism:

Oryza sativa f. spontanea

NCBI taxonomy Id: 4536
Other names: O. sativa f. spontanea, Oryza nivara, Oryza nivara S.D.Sharma & Shastry, Oryza sativa f. spontanea Roshev. nom. illeg.

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0FGW7	A0A0E0FHN2	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.813
A0A0E0FGW7	A0A0E0FQ03	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.718
A0A0E0FGW7	A0A0E0FXF2	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.819
A0A0E0FGW7	A0A0E0G1L4	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.538
A0A0E0FGW7	A0A0E0G1Y4	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.716
A0A0E0FGW7	A0A0E0GA20	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.554
A0A0E0FGW7	A0A0E0GMC1	Uncharacterized protein; Belongs to the DEAD box helicase family.	MIF4G domain-containing protein.	0.658
A0A0E0FGW7	A0A0E0GVE8	Uncharacterized protein; Belongs to the DEAD box helicase family.	RRM domain-containing protein.	0.678
A0A0E0FGW7	A0A0E0GW47	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.591
A0A0E0FGW7	A0A0E0H177	Uncharacterized protein; Belongs to the DEAD box helicase family.	Smg4_UPF3 domain-containing protein.	0.739
A0A0E0FGW7	A0A0E0H2N7	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.694
A0A0E0FGW7	A0A0E0H3B3	Uncharacterized protein; Belongs to the DEAD box helicase family.	Upf2 domain-containing protein.	0.554
A0A0E0FGW7	A0A0E0H3B4	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.554
A0A0E0FGW7	A0A0E0H953	Uncharacterized protein; Belongs to the DEAD box helicase family.	RRM domain-containing protein.	0.678
A0A0E0FGW7	A0A0E0I131	Uncharacterized protein; Belongs to the DEAD box helicase family.	Helicase ATP-binding domain-containing protein.	0.581
A0A0E0FGW7	A0A0E0I6D8	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.652
A0A0E0FGW7	A0A0E0IA03	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.459
A0A0E0FGW7	A0A0E0J937	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.652
A0A0E0FHN2	A0A0E0FGW7	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.813
A0A0E0FHN2	A0A0E0FMZ6	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.812