23 items (Oryza sativa f. spontanea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0HGJ9	Uncharacterized protein. (1569 aa)
	A0A0E0HSG4	Uncharacterized protein. (291 aa)
	A0A0E0I3M7	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (116 aa)
	A0A0E0I4H6	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (89 aa)
	A0A0E0I7E1	Uncharacterized protein. (786 aa)
	A0A0E0IH80	Uncharacterized protein. (298 aa)
	A0A0E0IHI8	Uncharacterized protein. (167 aa)
	A0A0E0IIS6	PCI domain-containing protein. (409 aa)
	A0A0E0J538	Uncharacterized protein. (277 aa)
	A0A0E0J9U4	Uncharacterized protein. (1069 aa)
	A0A0E0JB66	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (114 aa)
	A0A0E0JBI1	Uncharacterized protein. (664 aa)
	A0A0E0FXP7	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...] (162 aa)
	A0A0E0FXS7	Uncharacterized protein. (667 aa)
	A0A0E0G0R4	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (105 aa)
	A0A0E0GDE9	Uncharacterized protein. (549 aa)
	A0A0E0GK56	Uncharacterized protein. (1029 aa)
	A0A0E0GMQ6	Ubiquitin-like domain-containing protein. (169 aa)
	A0A0E0GRF2	Uncharacterized protein. (358 aa)
	A0A0E0GTZ7	Uncharacterized protein. (606 aa)
	A0A0E0GZ69	Uncharacterized protein. (1056 aa)
	A0A0E0HGB2	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1666 aa)
	A0A0E0HMK4	Transcription elongation factor SPT5. (1108 aa)

Your Current Organism:

Oryza sativa f. spontanea

NCBI taxonomy Id: 4536
Other names: O. sativa f. spontanea, Oryza nivara, Oryza nivara S.D.Sharma & Shastry, Oryza sativa f. spontanea Roshev. nom. illeg.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0FXP7	A0A0E0IIS6	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...]	PCI domain-containing protein.	0.938
A0A0E0FXS7	A0A0E0G0R4	Uncharacterized protein.	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	0.755
A0A0E0FXS7	A0A0E0GDE9	Uncharacterized protein.	Uncharacterized protein.	0.692
A0A0E0FXS7	A0A0E0GK56	Uncharacterized protein.	Uncharacterized protein.	0.938
A0A0E0FXS7	A0A0E0GMQ6	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.687
A0A0E0FXS7	A0A0E0GRF2	Uncharacterized protein.	Uncharacterized protein.	0.987
A0A0E0FXS7	A0A0E0GZ69	Uncharacterized protein.	Uncharacterized protein.	0.938
A0A0E0FXS7	A0A0E0HGB2	Uncharacterized protein.	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.	0.838
A0A0E0FXS7	A0A0E0HGJ9	Uncharacterized protein.	Uncharacterized protein.	0.692
A0A0E0FXS7	A0A0E0HMK4	Uncharacterized protein.	Transcription elongation factor SPT5.	0.692
A0A0E0FXS7	A0A0E0HSG4	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A0E0FXS7	A0A0E0I3M7	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.849
A0A0E0FXS7	A0A0E0I4H6	Uncharacterized protein.	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	0.755
A0A0E0FXS7	A0A0E0I7E1	Uncharacterized protein.	Uncharacterized protein.	0.991
A0A0E0FXS7	A0A0E0IH80	Uncharacterized protein.	Uncharacterized protein.	0.838
A0A0E0FXS7	A0A0E0IHI8	Uncharacterized protein.	Uncharacterized protein.	0.838
A0A0E0FXS7	A0A0E0J538	Uncharacterized protein.	Uncharacterized protein.	0.838
A0A0E0FXS7	A0A0E0J9U4	Uncharacterized protein.	Uncharacterized protein.	0.959
A0A0E0FXS7	A0A0E0JB66	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.849
A0A0E0G0R4	A0A0E0FXS7	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	Uncharacterized protein.	0.755