(31 nodes) Regulation of transcription elongation from RNA polymerase II promoter network (Oryza sativa f. spontanea)

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second shell of interactors

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proteins of unknown 3D structure

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Known Interactions

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Predicted Interactions

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Your Input:
	A0A0E0GRF2	Uncharacterized protein. (358 aa)
	A0A0E0GME0	Protein kinase domain-containing protein. (348 aa)
	A0A0E0GK56	Uncharacterized protein. (1029 aa)
	A0A0E0GJS7	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (527 aa)
	A0A0E0G9H4	Uncharacterized protein. (210 aa)
	A0A0E0G899	Protein kinase domain-containing protein. (917 aa)
	A0A0E0FZ19	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (491 aa)
	A0A0E0FXS7	Uncharacterized protein. (667 aa)
	A0A0E0FI26	Protein kinase domain-containing protein. (704 aa)
	A0A0E0FM20	EAF domain-containing protein. (319 aa)
	A0A0E0JBI1	Uncharacterized protein. (664 aa)
	A0A0E0J9U4	Uncharacterized protein. (1069 aa)
	A0A0E0J9N0	Protein kinase domain-containing protein. (326 aa)
	A0A0E0J538	Uncharacterized protein. (277 aa)
	A0A0E0J060	Protein kinase domain-containing protein. (617 aa)
	A0A0E0IWS4	Protein kinase domain-containing protein. (132 aa)
	A0A0E0IQ94	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (532 aa)
	A0A0E0ILJ3	Protein kinase domain-containing protein. (429 aa)
	A0A0E0IHI8	Uncharacterized protein. (167 aa)
	A0A0E0IH80	Uncharacterized protein. (298 aa)
	A0A0E0ICT9	Protein kinase domain-containing protein. (186 aa)
	A0A0E0I6I6	Protein kinase domain-containing protein. (756 aa)
	A0A0E0I5E4	Protein kinase domain-containing protein. (574 aa)
	A0A0E0I474	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family. (133 aa)
	A0A0E0I371	Protein kinase domain-containing protein. (770 aa)
	A0A0E0HZR4	Protein kinase domain-containing protein. (1356 aa)
	A0A0E0HGB2	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1666 aa)
	A0A0E0HDV4	Protein kinase domain-containing protein. (519 aa)
	A0A0E0H862	Protein kinase domain-containing protein. (687 aa)
	A0A0E0GZ69	Uncharacterized protein. (1056 aa)
	A0A0E0GTZ7	Uncharacterized protein. (606 aa)

Your Current Organism:

Oryza sativa f. spontanea

NCBI taxonomy Id: 4536
Other names: O. sativa f. spontanea, Oryza nivara, Oryza nivara S.D.Sharma & Shastry, Oryza sativa f. spontanea Roshev. nom. illeg.

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0FI26	A0A0E0GK56	Protein kinase domain-containing protein.	Uncharacterized protein.	0.612
A0A0E0FI26	A0A0E0GRF2	Protein kinase domain-containing protein.	Uncharacterized protein.	0.499
A0A0E0FI26	A0A0E0GZ69	Protein kinase domain-containing protein.	Uncharacterized protein.	0.612
A0A0E0FI26	A0A0E0I474	Protein kinase domain-containing protein.	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	0.732
A0A0E0FI26	A0A0E0J9U4	Protein kinase domain-containing protein.	Uncharacterized protein.	0.612
A0A0E0FM20	A0A0E0FXS7	EAF domain-containing protein.	Uncharacterized protein.	0.466
A0A0E0FM20	A0A0E0GJS7	EAF domain-containing protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.699
A0A0E0FM20	A0A0E0GTZ7	EAF domain-containing protein.	Uncharacterized protein.	0.466
A0A0E0FM20	A0A0E0HGB2	EAF domain-containing protein.	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.	0.675
A0A0E0FM20	A0A0E0I474	EAF domain-containing protein.	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	0.922
A0A0E0FM20	A0A0E0IH80	EAF domain-containing protein.	Uncharacterized protein.	0.675
A0A0E0FM20	A0A0E0IHI8	EAF domain-containing protein.	Uncharacterized protein.	0.675
A0A0E0FM20	A0A0E0IQ94	EAF domain-containing protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.699
A0A0E0FM20	A0A0E0J538	EAF domain-containing protein.	Uncharacterized protein.	0.675
A0A0E0FM20	A0A0E0J9U4	EAF domain-containing protein.	Uncharacterized protein.	0.764
A0A0E0FM20	A0A0E0JBI1	EAF domain-containing protein.	Uncharacterized protein.	0.466
A0A0E0FXS7	A0A0E0FM20	Uncharacterized protein.	EAF domain-containing protein.	0.466
A0A0E0FXS7	A0A0E0GK56	Uncharacterized protein.	Uncharacterized protein.	0.938
A0A0E0FXS7	A0A0E0GRF2	Uncharacterized protein.	Uncharacterized protein.	0.987
A0A0E0FXS7	A0A0E0GZ69	Uncharacterized protein.	Uncharacterized protein.	0.938