(23 nodes) miRNA processing network (Oryza sativa f. spontanea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0HHP0	FHA domain-containing protein. (737 aa)
	A0A0E0FXL6	Uncharacterized protein. (1798 aa)
	A0A0E0G0C8	Uncharacterized protein. (339 aa)
	A0A0E0G380	Uncharacterized protein. (220 aa)
	A0A0E0G9T4	RRM domain-containing protein. (704 aa)
	A0A0E0GB96	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1883 aa)
	A0A0E0GMC1	MIF4G domain-containing protein. (914 aa)
	A0A0E0H9G7	Uncharacterized protein. (606 aa)
	A0A0E0HES1	Uncharacterized protein. (188 aa)
	A0A0E0HES4	C2H2-type domain-containing protein. (666 aa)
	A0A0E0HHQ5	FHA domain-containing protein. (95 aa)
	A0A0E0HQG1	Uncharacterized protein. (662 aa)
	A0A0E0HR69	Uncharacterized protein. (977 aa)
	A0A0E0HUV9	Uncharacterized protein. (1812 aa)
	A0A0E0HWZ8	Uncharacterized protein. (948 aa)
	A0A0E0I1T6	Uncharacterized protein. (1287 aa)
	A0A0E0IEK6	C2H2-type domain-containing protein. (656 aa)
	A0A0E0IM62	Uncharacterized protein. (357 aa)
	A0A0E0IMW1	Uncharacterized protein. (308 aa)
	A0A0E0IRA0	Uncharacterized protein. (324 aa)
	A0A0E0IU36	Uncharacterized protein. (514 aa)
	A0A0E0JCT7	Uncharacterized protein. (648 aa)
	rpoB-2	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1075 aa)

Your Current Organism:

Oryza sativa f. spontanea

NCBI taxonomy Id: 4536
Other names: O. sativa f. spontanea, Oryza nivara, Oryza nivara S.D.Sharma & Shastry, Oryza sativa f. spontanea Roshev. nom. illeg.

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0E0FXL6	A0A0E0G0C8	A0A0E0FXL6	A0A0E0G0C8	Uncharacterized protein.	Uncharacterized protein.	0.712
A0A0E0FXL6	A0A0E0G9T4	A0A0E0FXL6	A0A0E0G9T4	Uncharacterized protein.	RRM domain-containing protein.	0.977
A0A0E0FXL6	A0A0E0GMC1	A0A0E0FXL6	A0A0E0GMC1	Uncharacterized protein.	MIF4G domain-containing protein.	0.982
A0A0E0FXL6	A0A0E0HHP0	A0A0E0FXL6	A0A0E0HHP0	Uncharacterized protein.	FHA domain-containing protein.	0.635
A0A0E0FXL6	A0A0E0HHQ5	A0A0E0FXL6	A0A0E0HHQ5	Uncharacterized protein.	FHA domain-containing protein.	0.635
A0A0E0FXL6	A0A0E0HQG1	A0A0E0FXL6	A0A0E0HQG1	Uncharacterized protein.	Uncharacterized protein.	0.406
A0A0E0FXL6	A0A0E0HR69	A0A0E0FXL6	A0A0E0HR69	Uncharacterized protein.	Uncharacterized protein.	0.475
A0A0E0FXL6	A0A0E0I1T6	A0A0E0FXL6	A0A0E0I1T6	Uncharacterized protein.	Uncharacterized protein.	0.917
A0A0E0FXL6	A0A0E0IEK6	A0A0E0FXL6	A0A0E0IEK6	Uncharacterized protein.	C2H2-type domain-containing protein.	0.434
A0A0E0FXL6	rpoB-2	A0A0E0FXL6	Q6ENI4	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.758
A0A0E0G0C8	A0A0E0FXL6	A0A0E0G0C8	A0A0E0FXL6	Uncharacterized protein.	Uncharacterized protein.	0.712
A0A0E0G0C8	A0A0E0G9T4	A0A0E0G0C8	A0A0E0G9T4	Uncharacterized protein.	RRM domain-containing protein.	0.942
A0A0E0G0C8	A0A0E0GMC1	A0A0E0G0C8	A0A0E0GMC1	Uncharacterized protein.	MIF4G domain-containing protein.	0.938
A0A0E0G0C8	A0A0E0HQG1	A0A0E0G0C8	A0A0E0HQG1	Uncharacterized protein.	Uncharacterized protein.	0.739
A0A0E0G0C8	A0A0E0I1T6	A0A0E0G0C8	A0A0E0I1T6	Uncharacterized protein.	Uncharacterized protein.	0.782
A0A0E0G0C8	rpoB-2	A0A0E0G0C8	Q6ENI4	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.644
A0A0E0G380	A0A0E0H9G7	A0A0E0G380	A0A0E0H9G7	Uncharacterized protein.	Uncharacterized protein.	0.449
A0A0E0G380	A0A0E0IM62	A0A0E0G380	A0A0E0IM62	Uncharacterized protein.	Uncharacterized protein.	0.449
A0A0E0G380	A0A0E0IU36	A0A0E0G380	A0A0E0IU36	Uncharacterized protein.	Uncharacterized protein.	0.449
A0A0E0G380	A0A0E0JCT7	A0A0E0G380	A0A0E0JCT7	Uncharacterized protein.	Uncharacterized protein.	0.701