(26 nodes) pre-mRNA binding network (Oryza sativa f. spontanea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0FHZ3	Uncharacterized protein. (482 aa)
	A0A0E0FI21	MPN domain-containing protein. (2630 aa)
	A0A0E0FPT3	X8 domain-containing protein. (257 aa)
	A0A0E0FQQ4	Uncharacterized protein. (265 aa)
	A0A0E0FZ00	RRM domain-containing protein. (510 aa)
	A0A0E0FZ66	Uncharacterized protein. (194 aa)
	A0A0E0G4P0	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (228 aa)
	A0A0E0G884	Uncharacterized protein. (680 aa)
	A0A0E0GD89	SKIP_SNW domain-containing protein. (607 aa)
	A0A0E0GGJ2	Uncharacterized protein. (974 aa)
	A0A0E0GLU1	RRM domain-containing protein. (404 aa)
	A0A0E0GTJ0	DUF3700 domain-containing protein. (251 aa)
	A0A0E0GUX0	DUF3700 domain-containing protein. (249 aa)
	A0A0E0H7J5	DUF3700 domain-containing protein. (258 aa)
	A0A0E0HA11	MPN domain-containing protein. (1985 aa)
	A0A0E0HA71	Uncharacterized protein. (416 aa)
	A0A0E0HIG9	C3H1-type domain-containing protein. (148 aa)
	A0A0E0HMR0	SKIP_SNW domain-containing protein. (492 aa)
	A0A0E0HSP1	Uncharacterized protein. (503 aa)
	A0A0E0HZ41	Uncharacterized protein. (486 aa)
	A0A0E0I6S8	Slu7 domain-containing protein. (536 aa)
	A0A0E0ILM0	Uncharacterized protein. (290 aa)
	A0A0E0J1W1	Uncharacterized protein. (271 aa)
	A0A0E0J476	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (521 aa)
	A0A0E0J4M3	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (574 aa)
	A0A0E0JB16	X8 domain-containing protein. (271 aa)

Your Current Organism:

Oryza sativa f. spontanea

NCBI taxonomy Id: 4536
Other names: O. sativa f. spontanea, Oryza nivara, Oryza nivara S.D.Sharma & Shastry, Oryza sativa f. spontanea Roshev. nom. illeg.

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0FHZ3	A0A0E0FI21	Uncharacterized protein.	MPN domain-containing protein.	0.917
A0A0E0FHZ3	A0A0E0FPT3	Uncharacterized protein.	X8 domain-containing protein.	0.479
A0A0E0FHZ3	A0A0E0FQQ4	Uncharacterized protein.	Uncharacterized protein.	0.553
A0A0E0FHZ3	A0A0E0FZ00	Uncharacterized protein.	RRM domain-containing protein.	0.442
A0A0E0FHZ3	A0A0E0FZ66	Uncharacterized protein.	Uncharacterized protein.	0.442
A0A0E0FHZ3	A0A0E0G884	Uncharacterized protein.	Uncharacterized protein.	0.558
A0A0E0FHZ3	A0A0E0GD89	Uncharacterized protein.	SKIP_SNW domain-containing protein.	0.973
A0A0E0FHZ3	A0A0E0GGJ2	Uncharacterized protein.	Uncharacterized protein.	0.442
A0A0E0FHZ3	A0A0E0GLU1	Uncharacterized protein.	RRM domain-containing protein.	0.872
A0A0E0FHZ3	A0A0E0GTJ0	Uncharacterized protein.	DUF3700 domain-containing protein.	0.479
A0A0E0FHZ3	A0A0E0GUX0	Uncharacterized protein.	DUF3700 domain-containing protein.	0.479
A0A0E0FHZ3	A0A0E0H7J5	Uncharacterized protein.	DUF3700 domain-containing protein.	0.479
A0A0E0FHZ3	A0A0E0HA11	Uncharacterized protein.	MPN domain-containing protein.	0.917
A0A0E0FHZ3	A0A0E0HA71	Uncharacterized protein.	Uncharacterized protein.	0.442
A0A0E0FHZ3	A0A0E0HIG9	Uncharacterized protein.	C3H1-type domain-containing protein.	0.553
A0A0E0FHZ3	A0A0E0HMR0	Uncharacterized protein.	SKIP_SNW domain-containing protein.	0.973
A0A0E0FHZ3	A0A0E0I6S8	Uncharacterized protein.	Slu7 domain-containing protein.	0.931
A0A0E0FHZ3	A0A0E0ILM0	Uncharacterized protein.	Uncharacterized protein.	0.600
A0A0E0FHZ3	A0A0E0J1W1	Uncharacterized protein.	Uncharacterized protein.	0.479
A0A0E0FHZ3	A0A0E0J476	Uncharacterized protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.479