(32 nodes) Retrograde transport, endosome to Golgi network (Oryza sativa f. spontanea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0JAN7	Uncharacterized protein. (336 aa)
	A0A0E0FHT4	Uncharacterized protein. (770 aa)
	A0A0E0FNZ6	DAO domain-containing protein. (332 aa)
	A0A0E0FX91	Vps53_N domain-containing protein. (834 aa)
	A0A0E0G4N4	Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family. (188 aa)
	A0A0E0G9J9	Uncharacterized protein. (80 aa)
	A0A0E0GDT4	RIC1 domain-containing protein. (1123 aa)
	A0A0E0GHV7	Uncharacterized protein. (203 aa)
	A0A0E0GIS4	WPP domain-containing protein. (153 aa)
	A0A0E0GJJ8	Uncharacterized protein. (484 aa)
	A0A0E0GM10	Uncharacterized protein. (500 aa)
	A0A0E0GP36	Uncharacterized protein. (702 aa)
	A0A0E0GP39	Uncharacterized protein. (76 aa)
	A0A0E0GSR3	WASH_WAHD domain-containing protein. (293 aa)
	A0A0E0GV30	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting. (793 aa)
	A0A0E0GY08	Vps54 domain-containing protein. (1008 aa)
	A0A0E0HTK1	Uncharacterized protein. (521 aa)
	A0A0E0HWJ6	DAO domain-containing protein. (387 aa)
	A0A0E0I134	Uncharacterized protein. (208 aa)
	A0A0E0I338	WPP domain-containing protein. (369 aa)
	A0A0E0I3L7	Uncharacterized protein. (582 aa)
	A0A0E0I3U7	Uncharacterized protein. (1263 aa)
	A0A0E0IEI5	Uncharacterized protein. (90 aa)
	A0A0E0IKC2	Uncharacterized protein. (532 aa)
	A0A0E0IMW5	Uncharacterized protein. (101 aa)
	A0A0E0IP87	Uncharacterized protein. (574 aa)
	A0A0E0IQR4	Uncharacterized protein. (118 aa)
	A0A0E0IQR5	WPP domain-containing protein. (130 aa)
	A0A0E0IU92	Uncharacterized protein. (617 aa)
	A0A0E0IVZ8	Uncharacterized protein. (981 aa)
	A0A0E0J2V7	Uncharacterized protein. (514 aa)
	A0A0E0J4H3	Uncharacterized protein. (304 aa)

Your Current Organism:

Oryza sativa f. spontanea

NCBI taxonomy Id: 4536
Other names: O. sativa f. spontanea, Oryza nivara, Oryza nivara S.D.Sharma & Shastry, Oryza sativa f. spontanea Roshev. nom. illeg.

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0FHT4	A0A0E0FX91	Uncharacterized protein.	Vps53_N domain-containing protein.	0.999
A0A0E0FHT4	A0A0E0G4N4	Uncharacterized protein.	Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.	0.408
A0A0E0FHT4	A0A0E0GDT4	Uncharacterized protein.	RIC1 domain-containing protein.	0.724
A0A0E0FHT4	A0A0E0GHV7	Uncharacterized protein.	Uncharacterized protein.	0.760
A0A0E0FHT4	A0A0E0GP36	Uncharacterized protein.	Uncharacterized protein.	0.983
A0A0E0FHT4	A0A0E0GY08	Uncharacterized protein.	Vps54 domain-containing protein.	0.996
A0A0E0FHT4	A0A0E0HTK1	Uncharacterized protein.	Uncharacterized protein.	0.745
A0A0E0FHT4	A0A0E0I134	Uncharacterized protein.	Uncharacterized protein.	0.760
A0A0E0FHT4	A0A0E0IU92	Uncharacterized protein.	Uncharacterized protein.	0.984
A0A0E0FHT4	A0A0E0IVZ8	Uncharacterized protein.	Uncharacterized protein.	0.964
A0A0E0FX91	A0A0E0FHT4	Vps53_N domain-containing protein.	Uncharacterized protein.	0.999
A0A0E0FX91	A0A0E0G4N4	Vps53_N domain-containing protein.	Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.	0.472
A0A0E0FX91	A0A0E0GDT4	Vps53_N domain-containing protein.	RIC1 domain-containing protein.	0.719
A0A0E0FX91	A0A0E0GHV7	Vps53_N domain-containing protein.	Uncharacterized protein.	0.915
A0A0E0FX91	A0A0E0GP36	Vps53_N domain-containing protein.	Uncharacterized protein.	0.980
A0A0E0FX91	A0A0E0GY08	Vps53_N domain-containing protein.	Vps54 domain-containing protein.	0.999
A0A0E0FX91	A0A0E0HTK1	Vps53_N domain-containing protein.	Uncharacterized protein.	0.815
A0A0E0FX91	A0A0E0I134	Vps53_N domain-containing protein.	Uncharacterized protein.	0.915
A0A0E0FX91	A0A0E0IU92	Vps53_N domain-containing protein.	Uncharacterized protein.	0.980
A0A0E0FX91	A0A0E0IVZ8	Vps53_N domain-containing protein.	Uncharacterized protein.	0.957