(10 nodes) RNA polymerase II preinitiation complex assembly network (Oryza sativa f. spontanea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0GQC3	BTP domain-containing protein. (401 aa)
	A0A0E0FM46	TAF domain-containing protein. (622 aa)
	A0A0E0FR80	TAFII28 domain-containing protein. (501 aa)
	A0A0E0FVP7	TFIID_20kDa domain-containing protein. (540 aa)
	A0A0E0GBQ4	BTP domain-containing protein. (294 aa)
	A0A0E0GP19	Uncharacterized protein. (229 aa)
	A0A0E0H6I8	TFIID_20kDa domain-containing protein. (538 aa)
	A0A0E0HD07	TAFII55_N domain-containing protein. (178 aa)
	A0A0E0HU48	Uncharacterized protein. (1798 aa)
	A0A0E0JBE2	BTP domain-containing protein. (366 aa)

Your Current Organism:

Oryza sativa f. spontanea

NCBI taxonomy Id: 4536
Other names: O. sativa f. spontanea, Oryza nivara, Oryza nivara S.D.Sharma & Shastry, Oryza sativa f. spontanea Roshev. nom. illeg.

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0FM46	A0A0E0FR80	TAF domain-containing protein.	TAFII28 domain-containing protein.	0.999
A0A0E0FM46	A0A0E0FVP7	TAF domain-containing protein.	TFIID_20kDa domain-containing protein.	0.987
A0A0E0FM46	A0A0E0GBQ4	TAF domain-containing protein.	BTP domain-containing protein.	0.983
A0A0E0FM46	A0A0E0GP19	TAF domain-containing protein.	Uncharacterized protein.	0.998
A0A0E0FM46	A0A0E0GQC3	TAF domain-containing protein.	BTP domain-containing protein.	0.983
A0A0E0FM46	A0A0E0H6I8	TAF domain-containing protein.	TFIID_20kDa domain-containing protein.	0.987
A0A0E0FM46	A0A0E0HD07	TAF domain-containing protein.	TAFII55_N domain-containing protein.	0.999
A0A0E0FM46	A0A0E0HU48	TAF domain-containing protein.	Uncharacterized protein.	0.999
A0A0E0FM46	A0A0E0JBE2	TAF domain-containing protein.	BTP domain-containing protein.	0.983
A0A0E0FR80	A0A0E0FM46	TAFII28 domain-containing protein.	TAF domain-containing protein.	0.999
A0A0E0FR80	A0A0E0FVP7	TAFII28 domain-containing protein.	TFIID_20kDa domain-containing protein.	0.986
A0A0E0FR80	A0A0E0GBQ4	TAFII28 domain-containing protein.	BTP domain-containing protein.	0.984
A0A0E0FR80	A0A0E0GP19	TAFII28 domain-containing protein.	Uncharacterized protein.	0.998
A0A0E0FR80	A0A0E0GQC3	TAFII28 domain-containing protein.	BTP domain-containing protein.	0.984
A0A0E0FR80	A0A0E0H6I8	TAFII28 domain-containing protein.	TFIID_20kDa domain-containing protein.	0.986
A0A0E0FR80	A0A0E0HD07	TAFII28 domain-containing protein.	TAFII55_N domain-containing protein.	0.999
A0A0E0FR80	A0A0E0HU48	TAFII28 domain-containing protein.	Uncharacterized protein.	0.999
A0A0E0FR80	A0A0E0JBE2	TAFII28 domain-containing protein.	BTP domain-containing protein.	0.984
A0A0E0FVP7	A0A0E0FM46	TFIID_20kDa domain-containing protein.	TAF domain-containing protein.	0.987
A0A0E0FVP7	A0A0E0FR80	TFIID_20kDa domain-containing protein.	TAFII28 domain-containing protein.	0.986