21 items (Oryza sativa f. spontanea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0GS64	Uncharacterized protein. (528 aa)
	A0A0E0FTX5	Uncharacterized protein. (370 aa)
	A0A0E0FUN9	Uncharacterized protein. (524 aa)
	A0A0E0FVK9	Uncharacterized protein. (414 aa)
	A0A0E0FZL6	Uncharacterized protein. (344 aa)
	A0A0E0GGJ0	Uncharacterized protein. (701 aa)
	A0A0E0GI32	Uncharacterized protein. (388 aa)
	A0A0E0GI39	TPR_REGION domain-containing protein. (707 aa)
	A0A0E0GMM7	Uncharacterized protein. (726 aa)
	A0A0E0GNK5	Uncharacterized protein. (334 aa)
	A0A0E0GRL3	WD_REPEATS_REGION domain-containing protein. (380 aa)
	petA	Cytochrome f. (574 aa)
	A0A0E0HJT3	Uncharacterized protein. (867 aa)
	A0A0E0HNS9	Uncharacterized protein. (275 aa)
	A0A0E0IFV0	Uncharacterized protein. (623 aa)
	A0A0E0IP55	Uncharacterized protein. (838 aa)
	A0A0E0IR06	Uncharacterized protein. (421 aa)
	A0A0E0ITG1	TPR_REGION domain-containing protein. (727 aa)
	A0A0E0IZE5	Uncharacterized protein. (856 aa)
	A0A0E0J5E0	Uncharacterized protein. (697 aa)
	A0A0E0JBW1	Uncharacterized protein. (896 aa)

Your Current Organism:

Oryza sativa f. spontanea

NCBI taxonomy Id: 4536
Other names: O. sativa f. spontanea, Oryza nivara, Oryza nivara S.D.Sharma & Shastry, Oryza sativa f. spontanea Roshev. nom. illeg.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0E0GRL3	A0A0E0HJT3	A0A0E0GRL3	A0A0E0HJT3	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.966
A0A0E0GRL3	A0A0E0HNS9	A0A0E0GRL3	A0A0E0HNS9	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.980
A0A0E0GRL3	A0A0E0IP55	A0A0E0GRL3	A0A0E0IP55	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.966
A0A0E0GRL3	A0A0E0IZE5	A0A0E0GRL3	A0A0E0IZE5	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.966
A0A0E0GRL3	A0A0E0JBW1	A0A0E0GRL3	A0A0E0JBW1	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.970
A0A0E0GRL3	petA	A0A0E0GRL3	A0A0E0HCT9	WD_REPEATS_REGION domain-containing protein.	Cytochrome f.	0.980
A0A0E0HJT3	A0A0E0GRL3	A0A0E0HJT3	A0A0E0GRL3	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.966
A0A0E0HNS9	A0A0E0GRL3	A0A0E0HNS9	A0A0E0GRL3	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.980
A0A0E0HNS9	petA	A0A0E0HNS9	A0A0E0HCT9	Uncharacterized protein.	Cytochrome f.	0.401
A0A0E0IP55	A0A0E0GRL3	A0A0E0IP55	A0A0E0GRL3	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.966
A0A0E0IZE5	A0A0E0GRL3	A0A0E0IZE5	A0A0E0GRL3	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.966
A0A0E0JBW1	A0A0E0GRL3	A0A0E0JBW1	A0A0E0GRL3	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.970
petA	A0A0E0GRL3	A0A0E0HCT9	A0A0E0GRL3	Cytochrome f.	WD_REPEATS_REGION domain-containing protein.	0.980
petA	A0A0E0HNS9	A0A0E0HCT9	A0A0E0HNS9	Cytochrome f.	Uncharacterized protein.	0.401