9 items (Oryza sativa f. spontanea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0FP22	Uncharacterized protein. (331 aa)
	A0A0E0G284	Uncharacterized protein. (369 aa)
	A0A0E0GQS6	Uncharacterized protein. (168 aa)
	A0A0E0HD35	Uncharacterized protein. (360 aa)
	A0A0E0HU58	Uncharacterized protein. (358 aa)
	A0A0E0I2Q3	Uncharacterized protein. (379 aa)
	A0A0E0IBE5	4-hydroxybenzoate polyprenyltransferase, mitochondrial; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate. (400 aa)
	A0A0E0IIW9	4-hydroxybenzoate polyprenyltransferase, mitochondrial; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate. (418 aa)
	A0A0E0FMJ6	Uncharacterized protein. (437 aa)

Your Current Organism:

Oryza sativa f. spontanea

NCBI taxonomy Id: 4536
Other names: O. sativa f. spontanea, Oryza nivara, Oryza nivara S.D.Sharma & Shastry, Oryza sativa f. spontanea Roshev. nom. illeg.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0FMJ6	A0A0E0FP22	Uncharacterized protein.	Uncharacterized protein.	0.800
A0A0E0FMJ6	A0A0E0G284	Uncharacterized protein.	Uncharacterized protein.	0.512
A0A0E0FMJ6	A0A0E0GQS6	Uncharacterized protein.	Uncharacterized protein.	0.800
A0A0E0FMJ6	A0A0E0HU58	Uncharacterized protein.	Uncharacterized protein.	0.800
A0A0E0FMJ6	A0A0E0IBE5	Uncharacterized protein.	4-hydroxybenzoate polyprenyltransferase, mitochondrial; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate.	0.800
A0A0E0FMJ6	A0A0E0IIW9	Uncharacterized protein.	4-hydroxybenzoate polyprenyltransferase, mitochondrial; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate.	0.800
A0A0E0FP22	A0A0E0FMJ6	Uncharacterized protein.	Uncharacterized protein.	0.800
A0A0E0FP22	A0A0E0G284	Uncharacterized protein.	Uncharacterized protein.	0.831
A0A0E0FP22	A0A0E0HU58	Uncharacterized protein.	Uncharacterized protein.	0.931
A0A0E0FP22	A0A0E0I2Q3	Uncharacterized protein.	Uncharacterized protein.	0.936
A0A0E0G284	A0A0E0FMJ6	Uncharacterized protein.	Uncharacterized protein.	0.512
A0A0E0G284	A0A0E0FP22	Uncharacterized protein.	Uncharacterized protein.	0.831
A0A0E0G284	A0A0E0GQS6	Uncharacterized protein.	Uncharacterized protein.	0.831
A0A0E0G284	A0A0E0HU58	Uncharacterized protein.	Uncharacterized protein.	0.831
A0A0E0G284	A0A0E0IBE5	Uncharacterized protein.	4-hydroxybenzoate polyprenyltransferase, mitochondrial; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate.	0.831
A0A0E0G284	A0A0E0IIW9	Uncharacterized protein.	4-hydroxybenzoate polyprenyltransferase, mitochondrial; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate.	0.831
A0A0E0GQS6	A0A0E0FMJ6	Uncharacterized protein.	Uncharacterized protein.	0.800
A0A0E0GQS6	A0A0E0G284	Uncharacterized protein.	Uncharacterized protein.	0.831
A0A0E0HU58	A0A0E0FMJ6	Uncharacterized protein.	Uncharacterized protein.	0.800
A0A0E0HU58	A0A0E0FP22	Uncharacterized protein.	Uncharacterized protein.	0.931