(37 nodes) At5g01610-like superfamily network (Oryza sativa f. spontanea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0J7S3	Uncharacterized protein. (168 aa)
	A0A0E0FNA1	Uncharacterized protein. (170 aa)
	A0A0E0FP36	Uncharacterized protein. (160 aa)
	A0A0E0FQC8	Uncharacterized protein. (136 aa)
	A0A0E0FXH2	Uncharacterized protein. (171 aa)
	A0A0E0GB68	Uncharacterized protein. (275 aa)
	A0A0E0GG01	Uncharacterized protein. (168 aa)
	A0A0E0GIU3	Uncharacterized protein. (173 aa)
	A0A0E0GL82	Uncharacterized protein. (206 aa)
	A0A0E0GMP0	Uncharacterized protein. (203 aa)
	A0A0E0GNM9	Uncharacterized protein. (138 aa)
	A0A0E0GZ53	Uncharacterized protein. (173 aa)
	A0A0E0GNN0	Uncharacterized protein. (173 aa)
	A0A0E0GS67	Uncharacterized protein. (188 aa)
	A0A0E0GZ54	Uncharacterized protein. (182 aa)
	A0A0E0H1A2	Uncharacterized protein. (163 aa)
	A0A0E0HB67	Uncharacterized protein. (288 aa)
	A0A0E0HD02	Uncharacterized protein. (307 aa)
	A0A0E0HEM5	Uncharacterized protein. (190 aa)
	A0A0E0HH63	Uncharacterized protein. (167 aa)
	A0A0E0HIT1	Uncharacterized protein. (138 aa)
	A0A0E0HS38	Uncharacterized protein. (164 aa)
	A0A0E0HW18	Uncharacterized protein. (142 aa)
	A0A0E0HW19	Uncharacterized protein. (142 aa)
	A0A0E0HW29	Uncharacterized protein. (143 aa)
	A0A0E0HW30	Uncharacterized protein. (143 aa)
	A0A0E0HW31	Uncharacterized protein. (142 aa)
	A0A0E0HW32	Uncharacterized protein. (142 aa)
	A0A0E0HW33	F-box domain-containing protein. (556 aa)
	A0A0E0HW37	Uncharacterized protein. (549 aa)
	A0A0E0I233	Uncharacterized protein. (292 aa)
	A0A0E0IV34	Uncharacterized protein. (187 aa)
	A0A0E0J052	Uncharacterized protein. (322 aa)
	A0A0E0GS74	Uncharacterized protein. (202 aa)
	A0A0E0J053	Uncharacterized protein. (184 aa)
	A0A0E0J3W3	Uncharacterized protein. (159 aa)
	A0A0E0J3W5	Uncharacterized protein. (142 aa)

Your Current Organism:

Oryza sativa f. spontanea

NCBI taxonomy Id: 4536
Other names: O. sativa f. spontanea, Oryza nivara, Oryza nivara S.D.Sharma & Shastry, Oryza sativa f. spontanea Roshev. nom. illeg.

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Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0FXH2	A0A0E0IV34	Uncharacterized protein.	Uncharacterized protein.	0.424
A0A0E0GB68	A0A0E0GG01	Uncharacterized protein.	Uncharacterized protein.	0.547
A0A0E0GB68	A0A0E0GMP0	Uncharacterized protein.	Uncharacterized protein.	0.566
A0A0E0GB68	A0A0E0GNN0	Uncharacterized protein.	Uncharacterized protein.	0.446
A0A0E0GB68	A0A0E0HH63	Uncharacterized protein.	Uncharacterized protein.	0.486
A0A0E0GB68	A0A0E0HS38	Uncharacterized protein.	Uncharacterized protein.	0.444
A0A0E0GB68	A0A0E0HW19	Uncharacterized protein.	Uncharacterized protein.	0.475
A0A0E0GB68	A0A0E0HW31	Uncharacterized protein.	Uncharacterized protein.	0.415
A0A0E0GB68	A0A0E0IV34	Uncharacterized protein.	Uncharacterized protein.	0.590
A0A0E0GG01	A0A0E0GB68	Uncharacterized protein.	Uncharacterized protein.	0.547
A0A0E0GMP0	A0A0E0GB68	Uncharacterized protein.	Uncharacterized protein.	0.566
A0A0E0GNM9	A0A0E0HB67	Uncharacterized protein.	Uncharacterized protein.	0.407
A0A0E0GNN0	A0A0E0GB68	Uncharacterized protein.	Uncharacterized protein.	0.446
A0A0E0HB67	A0A0E0GNM9	Uncharacterized protein.	Uncharacterized protein.	0.407
A0A0E0HH63	A0A0E0GB68	Uncharacterized protein.	Uncharacterized protein.	0.486
A0A0E0HS38	A0A0E0GB68	Uncharacterized protein.	Uncharacterized protein.	0.444
A0A0E0HW19	A0A0E0GB68	Uncharacterized protein.	Uncharacterized protein.	0.475
A0A0E0HW31	A0A0E0GB68	Uncharacterized protein.	Uncharacterized protein.	0.415
A0A0E0IV34	A0A0E0FXH2	Uncharacterized protein.	Uncharacterized protein.	0.424
A0A0E0IV34	A0A0E0GB68	Uncharacterized protein.	Uncharacterized protein.	0.590