16 items (Oryza sativa f. spontanea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0FVU0	Steroid 5-alpha-reductase DET2; Involved in a reduction step in the biosynthesis of the plant steroid, brassinolide. (268 aa)
	A0A0E0GAS6	tRNA_edit domain-containing protein. (230 aa)
	A0A0E0GIN8	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (325 aa)
	A0A0E0H2A5	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (318 aa)
	A0A0E0H4R3	S5A_REDUCTASE domain-containing protein. (354 aa)
	A0A0E0H9P9	Uncharacterized protein. (193 aa)
	A0A0E0HPC0	Uncharacterized protein. (345 aa)
	A0A0E0HPC1	Uncharacterized protein. (928 aa)
	A0A0E0HPC5	Uncharacterized protein. (564 aa)
	A0A0E0HPC6	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (323 aa)
	A0A0E0HWX9	S5A_REDUCTASE domain-containing protein. (277 aa)
	A0A0E0I104	S5A_REDUCTASE domain-containing protein. (325 aa)
	A0A0E0IDC2	Uncharacterized protein. (247 aa)
	A0A0E0IZ44	Steroid 5-alpha-reductase DET2; Involved in a reduction step in the biosynthesis of the plant steroid, brassinolide. (272 aa)
	A0A0E0J1E0	Uncharacterized protein. (309 aa)
	A0A0E0J9I4	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (304 aa)

Your Current Organism:

Oryza sativa f. spontanea

NCBI taxonomy Id: 4536
Other names: O. sativa f. spontanea, Oryza nivara, Oryza nivara S.D.Sharma & Shastry, Oryza sativa f. spontanea Roshev. nom. illeg.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0FVU0	A0A0E0GIN8	Steroid 5-alpha-reductase DET2; Involved in a reduction step in the biosynthesis of the plant steroid, brassinolide.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.417
A0A0E0FVU0	A0A0E0H2A5	Steroid 5-alpha-reductase DET2; Involved in a reduction step in the biosynthesis of the plant steroid, brassinolide.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.417
A0A0E0FVU0	A0A0E0H4R3	Steroid 5-alpha-reductase DET2; Involved in a reduction step in the biosynthesis of the plant steroid, brassinolide.	S5A_REDUCTASE domain-containing protein.	0.777
A0A0E0FVU0	A0A0E0HPC0	Steroid 5-alpha-reductase DET2; Involved in a reduction step in the biosynthesis of the plant steroid, brassinolide.	Uncharacterized protein.	0.417
A0A0E0FVU0	A0A0E0HPC1	Steroid 5-alpha-reductase DET2; Involved in a reduction step in the biosynthesis of the plant steroid, brassinolide.	Uncharacterized protein.	0.417
A0A0E0FVU0	A0A0E0HPC5	Steroid 5-alpha-reductase DET2; Involved in a reduction step in the biosynthesis of the plant steroid, brassinolide.	Uncharacterized protein.	0.417
A0A0E0FVU0	A0A0E0HPC6	Steroid 5-alpha-reductase DET2; Involved in a reduction step in the biosynthesis of the plant steroid, brassinolide.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.417
A0A0E0FVU0	A0A0E0I104	Steroid 5-alpha-reductase DET2; Involved in a reduction step in the biosynthesis of the plant steroid, brassinolide.	S5A_REDUCTASE domain-containing protein.	0.761
A0A0E0FVU0	A0A0E0IDC2	Steroid 5-alpha-reductase DET2; Involved in a reduction step in the biosynthesis of the plant steroid, brassinolide.	Uncharacterized protein.	0.417
A0A0E0FVU0	A0A0E0J1E0	Steroid 5-alpha-reductase DET2; Involved in a reduction step in the biosynthesis of the plant steroid, brassinolide.	Uncharacterized protein.	0.417
A0A0E0FVU0	A0A0E0J9I4	Steroid 5-alpha-reductase DET2; Involved in a reduction step in the biosynthesis of the plant steroid, brassinolide.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.417
A0A0E0GAS6	A0A0E0GIN8	tRNA_edit domain-containing protein.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.417
A0A0E0GAS6	A0A0E0H2A5	tRNA_edit domain-containing protein.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.417
A0A0E0GAS6	A0A0E0H4R3	tRNA_edit domain-containing protein.	S5A_REDUCTASE domain-containing protein.	0.761
A0A0E0GAS6	A0A0E0HPC0	tRNA_edit domain-containing protein.	Uncharacterized protein.	0.417
A0A0E0GAS6	A0A0E0HPC1	tRNA_edit domain-containing protein.	Uncharacterized protein.	0.417
A0A0E0GAS6	A0A0E0HPC5	tRNA_edit domain-containing protein.	Uncharacterized protein.	0.417
A0A0E0GAS6	A0A0E0HPC6	tRNA_edit domain-containing protein.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.417
A0A0E0GAS6	A0A0E0I104	tRNA_edit domain-containing protein.	S5A_REDUCTASE domain-containing protein.	0.761
A0A0E0GAS6	A0A0E0IDC2	tRNA_edit domain-containing protein.	Uncharacterized protein.	0.417