97 items (Oryza sativa f. spontanea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0GQ58	Uncharacterized protein. (142 aa)
	A0A0E0JB66	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (114 aa)
	A0A0E0JAF7	Uncharacterized protein; Belongs to the cyclin family. (562 aa)
	A0A0E0J9U4	Uncharacterized protein. (1069 aa)
	A0A0E0J7I4	Uncharacterized protein. (165 aa)
	A0A0E0J763	TFIIS N-terminal domain-containing protein. (340 aa)
	A0A0E0J5L9	Skp1_POZ domain-containing protein; Belongs to the SKP1 family. (124 aa)
	A0A0E0J5A6	Uncharacterized protein. (187 aa)
	A0A0E0J538	Uncharacterized protein. (277 aa)
	A0A0E0J2H0	Uncharacterized protein. (1184 aa)
	A0A0E0IYN4	TFIIS N-terminal domain-containing protein. (338 aa)
	A0A0E0IQ94	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (532 aa)
	A0A0E0IQ68	TFIIS N-terminal domain-containing protein. (261 aa)
	A0A0E0IKW6	Uncharacterized protein; Belongs to the cyclin family. (638 aa)
	A0A0E0IHI8	Uncharacterized protein. (167 aa)
	A0A0E0IH80	Uncharacterized protein. (298 aa)
	A0A0E0IG60	RPOLD domain-containing protein. (330 aa)
	A0A0E0IET7	Uncharacterized protein. (564 aa)
	A0A0E0IDV6	Uncharacterized protein. (74 aa)
	A0A0E0IC99	Uncharacterized protein. (628 aa)
	A0A0E0IAI0	BSD domain-containing protein. (546 aa)
	A0A0E0I7N8	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1244 aa)
	A0A0E0I7E1	Uncharacterized protein. (786 aa)
	A0A0E0I535	Uncharacterized protein. (245 aa)
	A0A0E0I4F0	Uncharacterized protein; Belongs to the cyclin family. (490 aa)
	A0A0E0I474	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family. (133 aa)
	A0A0E0I3Y5	Uncharacterized protein. (822 aa)
	A0A0E0I3M7	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (116 aa)
	A0A0E0I3J0	Phorbol-ester/DAG-type domain-containing protein. (259 aa)
	A0A0E0I3I8	Phorbol-ester/DAG-type domain-containing protein. (190 aa)
	A0A0E0I0I6	Uncharacterized protein. (1024 aa)
	A0A0E0I088	Uncharacterized protein. (142 aa)
	A0A0E0I085	Uncharacterized protein. (140 aa)
	A0A0E0HYC6	Uncharacterized protein. (379 aa)
	A0A0E0HX74	RNA_pol_L_2 domain-containing protein. (120 aa)
	A0A0E0HVZ5	Uncharacterized protein. (612 aa)
	A0A0E0HPX3	MAT1 domain-containing protein. (195 aa)
	A0A0E0HPV9	Uncharacterized protein. (227 aa)
	A0A0E0HMK4	Transcription elongation factor SPT5. (1108 aa)
	A0A0E0HKT4	ULP_PROTEASE domain-containing protein. (1361 aa)
	A0A0E0HI55	Uncharacterized protein. (191 aa)
	A0A0E0HGS3	TFIIF_beta domain-containing protein. (243 aa)
	A0A0E0HGJ9	Uncharacterized protein. (1569 aa)
	A0A0E0HGB2	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1666 aa)
	A0A0E0HFB6	MAT1 domain-containing protein. (195 aa)
	A0A0E0HE65	Uncharacterized protein. (196 aa)
	A0A0E0HDW2	RNA polymerase II C-terminal domain phosphatase-like; This promotes the activity of RNA polymerase II. (549 aa)
	A0A0E0HAT3	Uncharacterized protein. (217 aa)
	A0A0E0H9V8	SHS2_Rpb7-N domain-containing protein. (175 aa)
	A0A0E0H9A4	Helicase ATP-binding domain-containing protein. (758 aa)
	A0A0E0H8G2	Uncharacterized protein. (112 aa)
	A0A0E0H7K0	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (471 aa)
	A0A0E0H7F9	Uncharacterized protein. (1321 aa)
	A0A0E0H6E1	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1343 aa)
	A0A0E0H6E0	Uncharacterized protein. (593 aa)
	A0A0E0H3F6	Uncharacterized protein. (946 aa)
	A0A0E0H360	Uncharacterized protein. (509 aa)
	A0A0E0H303	General transcription factor IIH subunit. (470 aa)
	A0A0E0H2D4	Uncharacterized protein. (205 aa)
	A0A0E0H1M9	Uncharacterized protein. (723 aa)
	A0A0E0GZD0	Uncharacterized protein. (377 aa)
	A0A0E0GZC7	SANTA domain-containing protein. (609 aa)
	A0A0E0GZ69	Uncharacterized protein. (1056 aa)
	A0A0E0GWH0	Uncharacterized protein. (726 aa)
	A0A0E0FHT0	CYCLIN domain-containing protein; Belongs to the cyclin family. (314 aa)
	A0A0E0FG56	TFIIS N-terminal domain-containing protein. (535 aa)
	A0A0E0GWF4	Uncharacterized protein. (195 aa)
	A0A0E0GVI9	Uncharacterized protein. (652 aa)
	A0A0E0GTZ7	Uncharacterized protein. (606 aa)
	A0A0E0GRF2	Uncharacterized protein. (358 aa)
	A0A0E0GR05	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1207 aa)
	A0A0E0GMQ6	Ubiquitin-like domain-containing protein. (169 aa)
	A0A0E0GMC1	MIF4G domain-containing protein. (914 aa)
	A0A0E0GK56	Uncharacterized protein. (1029 aa)
	A0A0E0GJS7	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (527 aa)
	A0A0E0GE18	RNA polymerase II C-terminal domain phosphatase-like; This promotes the activity of RNA polymerase II. (724 aa)
	A0A0E0GDE9	Uncharacterized protein. (549 aa)
	A0A0E0GB19	Uncharacterized protein. (650 aa)
	A0A0E0GA90	Uncharacterized protein. (941 aa)
	A0A0E0G9T4	RRM domain-containing protein. (704 aa)
	A0A0E0G8Q0	Uncharacterized protein. (660 aa)
	A0A0E0G4K6	Uncharacterized protein. (631 aa)
	A0A0E0G0P9	Uncharacterized protein; Belongs to the cyclin family. (464 aa)
	A0A0E0G0G3	Uncharacterized protein. (263 aa)
	A0A0E0G052	RPOL4c domain-containing protein. (142 aa)
	A0A0E0FXS7	Uncharacterized protein. (667 aa)
	A0A0E0FVX9	Uncharacterized protein. (941 aa)
	A0A0E0FTS0	TFIIF_beta domain-containing protein. (261 aa)
	A0A0E0FRJ6	Uncharacterized protein. (747 aa)
	A0A0E0FNX5	Plus3 domain-containing protein. (681 aa)
	A0A0E0FML1	SANTA domain-containing protein. (445 aa)
	A0A0E0FM20	EAF domain-containing protein. (319 aa)
	A0A0E0FL17	Uncharacterized protein. (162 aa)
	A0A0E0JBI1	Uncharacterized protein. (664 aa)
	rpoC2	DNA-directed RNA polymerase subunit beta'; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1513 aa)
	rpoC1	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the RNA polymerase beta' chain family. RpoC1 subfamily. (682 aa)
	rpoB-2	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1075 aa)

Your Current Organism:

Oryza sativa f. spontanea

NCBI taxonomy Id: 4536
Other names: O. sativa f. spontanea, Oryza nivara, Oryza nivara S.D.Sharma & Shastry, Oryza sativa f. spontanea Roshev. nom. illeg.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0E0FG56	A0A0E0FL17	A0A0E0FG56	A0A0E0FL17	TFIIS N-terminal domain-containing protein.	Uncharacterized protein.	0.651
A0A0E0FG56	A0A0E0FM20	A0A0E0FG56	A0A0E0FM20	TFIIS N-terminal domain-containing protein.	EAF domain-containing protein.	0.974
A0A0E0FG56	A0A0E0FML1	A0A0E0FG56	A0A0E0FML1	TFIIS N-terminal domain-containing protein.	SANTA domain-containing protein.	0.651
A0A0E0FG56	A0A0E0FNX5	A0A0E0FG56	A0A0E0FNX5	TFIIS N-terminal domain-containing protein.	Plus3 domain-containing protein.	0.945
A0A0E0FG56	A0A0E0FVX9	A0A0E0FG56	A0A0E0FVX9	TFIIS N-terminal domain-containing protein.	Uncharacterized protein.	0.697
A0A0E0FG56	A0A0E0FXS7	A0A0E0FG56	A0A0E0FXS7	TFIIS N-terminal domain-containing protein.	Uncharacterized protein.	0.906
A0A0E0FG56	A0A0E0G052	A0A0E0FG56	A0A0E0G052	TFIIS N-terminal domain-containing protein.	RPOL4c domain-containing protein.	0.849
A0A0E0FG56	A0A0E0G4K6	A0A0E0FG56	A0A0E0G4K6	TFIIS N-terminal domain-containing protein.	Uncharacterized protein.	0.857
A0A0E0FG56	A0A0E0G8Q0	A0A0E0FG56	A0A0E0G8Q0	TFIIS N-terminal domain-containing protein.	Uncharacterized protein.	0.857
A0A0E0FG56	A0A0E0G9T4	A0A0E0FG56	A0A0E0G9T4	TFIIS N-terminal domain-containing protein.	RRM domain-containing protein.	0.647
A0A0E0FG56	A0A0E0GA90	A0A0E0FG56	A0A0E0GA90	TFIIS N-terminal domain-containing protein.	Uncharacterized protein.	0.697
A0A0E0FG56	A0A0E0GB19	A0A0E0FG56	A0A0E0GB19	TFIIS N-terminal domain-containing protein.	Uncharacterized protein.	0.857
A0A0E0FG56	A0A0E0GDE9	A0A0E0FG56	A0A0E0GDE9	TFIIS N-terminal domain-containing protein.	Uncharacterized protein.	0.857
A0A0E0FG56	A0A0E0GE18	A0A0E0FG56	A0A0E0GE18	TFIIS N-terminal domain-containing protein.	RNA polymerase II C-terminal domain phosphatase-like; This promotes the activity of RNA polymerase II.	0.697
A0A0E0FG56	A0A0E0GK56	A0A0E0FG56	A0A0E0GK56	TFIIS N-terminal domain-containing protein.	Uncharacterized protein.	0.952
A0A0E0FG56	A0A0E0GMC1	A0A0E0FG56	A0A0E0GMC1	TFIIS N-terminal domain-containing protein.	MIF4G domain-containing protein.	0.687
A0A0E0FG56	A0A0E0GQ58	A0A0E0FG56	A0A0E0GQ58	TFIIS N-terminal domain-containing protein.	Uncharacterized protein.	0.775
A0A0E0FG56	A0A0E0GR05	A0A0E0FG56	A0A0E0GR05	TFIIS N-terminal domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.855
A0A0E0FG56	A0A0E0GRF2	A0A0E0FG56	A0A0E0GRF2	TFIIS N-terminal domain-containing protein.	Uncharacterized protein.	0.901
A0A0E0FG56	A0A0E0GTZ7	A0A0E0FG56	A0A0E0GTZ7	TFIIS N-terminal domain-containing protein.	Uncharacterized protein.	0.906