(14 nodes) Oligonucleotide/oligosaccharide-binding (OB)-fold network (Oryza sativa f. spontanea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0HQG4	Uncharacterized protein. (1084 aa)
	A0A0E0FFG1	Uncharacterized protein. (1280 aa)
	A0A0E0FIE1	Uncharacterized protein. (561 aa)
	A0A0E0FTN6	Uncharacterized protein. (1285 aa)
	A0A0E0FU32	Uncharacterized protein. (1476 aa)
	A0A0E0G5A9	Uncharacterized protein. (1240 aa)
	A0A0E0GLJ6	Uncharacterized protein. (722 aa)
	A0A0E0GTP4	Uncharacterized protein. (1150 aa)
	A0A0E0H104	Uncharacterized protein. (1413 aa)
	A0A0E0HDV6	Uncharacterized protein. (1070 aa)
	A0A0E0ITG0	Uncharacterized protein. (1072 aa)
	A0A0E0I457	Uncharacterized protein. (1799 aa)
	A0A0E0I1T6	Uncharacterized protein. (1287 aa)
	A0A0E0HM18	Uncharacterized protein. (856 aa)

Your Current Organism:

Oryza sativa f. spontanea

NCBI taxonomy Id: 4536
Other names: O. sativa f. spontanea, Oryza nivara, Oryza nivara S.D.Sharma & Shastry, Oryza sativa f. spontanea Roshev. nom. illeg.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0FFG1	A0A0E0FTN6	Uncharacterized protein.	Uncharacterized protein.	0.939
A0A0E0FFG1	A0A0E0FU32	Uncharacterized protein.	Uncharacterized protein.	0.527
A0A0E0FFG1	A0A0E0GLJ6	Uncharacterized protein.	Uncharacterized protein.	0.645
A0A0E0FFG1	A0A0E0GTP4	Uncharacterized protein.	Uncharacterized protein.	0.931
A0A0E0FFG1	A0A0E0I457	Uncharacterized protein.	Uncharacterized protein.	0.425
A0A0E0FFG1	A0A0E0ITG0	Uncharacterized protein.	Uncharacterized protein.	0.857
A0A0E0FIE1	A0A0E0FU32	Uncharacterized protein.	Uncharacterized protein.	0.885
A0A0E0FIE1	A0A0E0GLJ6	Uncharacterized protein.	Uncharacterized protein.	0.789
A0A0E0FIE1	A0A0E0HDV6	Uncharacterized protein.	Uncharacterized protein.	0.504
A0A0E0FIE1	A0A0E0I1T6	Uncharacterized protein.	Uncharacterized protein.	0.789
A0A0E0FTN6	A0A0E0FFG1	Uncharacterized protein.	Uncharacterized protein.	0.939
A0A0E0FTN6	A0A0E0FU32	Uncharacterized protein.	Uncharacterized protein.	0.523
A0A0E0FTN6	A0A0E0GLJ6	Uncharacterized protein.	Uncharacterized protein.	0.663
A0A0E0FTN6	A0A0E0GTP4	Uncharacterized protein.	Uncharacterized protein.	0.938
A0A0E0FTN6	A0A0E0I457	Uncharacterized protein.	Uncharacterized protein.	0.433
A0A0E0FTN6	A0A0E0ITG0	Uncharacterized protein.	Uncharacterized protein.	0.877
A0A0E0FU32	A0A0E0FFG1	Uncharacterized protein.	Uncharacterized protein.	0.527
A0A0E0FU32	A0A0E0FIE1	Uncharacterized protein.	Uncharacterized protein.	0.885
A0A0E0FU32	A0A0E0FTN6	Uncharacterized protein.	Uncharacterized protein.	0.523
A0A0E0FU32	A0A0E0G5A9	Uncharacterized protein.	Uncharacterized protein.	0.878