(100 nodes) Mixed, incl. SNARE complex, and Retrograde transport at the Trans-Golgi-Network network (Oryza punctata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0JEV5	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (344 aa)
	A0A0E0JG27	Uncharacterized protein; Belongs to the synaptobrevin family. (214 aa)
	A0A0E0JGH9	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (279 aa)
	A0A0E0JK43	Uncharacterized protein. (202 aa)
	A0A0E0JK59	V-SNARE domain-containing protein. (256 aa)
	A0A0E0JM54	Protein VACUOLELESS1; Required for vacuole biogenesis and vacuole enlargment in dividing and expanding cells. Involved in the docking or fusion of prevacuolar vesicles; Belongs to the VPS16 family. (869 aa)
	A0A0E0JN15	V-SNARE domain-containing protein. (221 aa)
	A0A0E0JQ43	Uncharacterized protein. (213 aa)
	A0A0E0JQ45	Uncharacterized protein. (207 aa)
	A0A0E0JR13	Uncharacterized protein. (249 aa)
	A0A0E0JRG1	Uncharacterized protein; Belongs to the synaptobrevin family. (216 aa)
	A0A0E0JSG3	Vps53_N domain-containing protein. (831 aa)
	A0A0E0JTA1	Homeobox domain-containing protein. (1167 aa)
	A0A0E0JTZ5	t-SNARE coiled-coil homology domain-containing protein. (234 aa)
	A0A0E0JU07	Uncharacterized protein; Belongs to the synaptobrevin family. (234 aa)
	A0A0E0JUR7	t-SNARE coiled-coil homology domain-containing protein. (232 aa)
	A0A0E0JUX8	Uncharacterized protein. (1917 aa)
	A0A0E0JV02	Uncharacterized protein. (298 aa)
	A0A0E0JZE3	t-SNARE coiled-coil homology domain-containing protein. (350 aa)
	A0A0E0JZF9	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (617 aa)
	A0A0E0JZH3	Cog4 domain-containing protein. (761 aa)
	A0A0E0K0K9	t-SNARE coiled-coil homology domain-containing protein. (261 aa)
	A0A0E0K1N8	Uncharacterized protein. (210 aa)
	A0A0E0K2X3	Uncharacterized protein. (198 aa)
	A0A0E0K366	Uncharacterized protein. (283 aa)
	A0A0E0K433	Uncharacterized protein. (257 aa)
	A0A0E0K589	Uncharacterized protein. (782 aa)
	A0A0E0K620	RIC1 domain-containing protein. (1088 aa)
	A0A0E0K702	t-SNARE coiled-coil homology domain-containing protein. (170 aa)
	A0A0E0K7R3	Uncharacterized protein. (175 aa)
	A0A0E0K977	Uncharacterized protein; Belongs to the synaptobrevin family. (223 aa)
	A0A0E0K9U8	t-SNARE coiled-coil homology domain-containing protein. (124 aa)
	A0A0E0KAF7	t-SNARE coiled-coil homology domain-containing protein. (339 aa)
	A0A0E0KAS0	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function. (740 aa)
	A0A0E0KDL4	AAA domain-containing protein. (802 aa)
	A0A0E0KEL1	Uncharacterized protein. (206 aa)
	A0A0E0KF32	Uncharacterized protein. (721 aa)
	A0A0E0KGD8	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (622 aa)
	A0A0E0KGZ1	Membrin; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network. (240 aa)
	A0A0E0KI89	CNH domain-containing protein. (950 aa)
	A0A0E0KIR3	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (311 aa)
	A0A0E0KIT4	Uncharacterized protein. (749 aa)
	A0A0E0KJX0	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (329 aa)
	A0A0E0KK03	Uncharacterized protein; Belongs to the synaptobrevin family. (456 aa)
	A0A0E0KLJ9	Uncharacterized protein. (758 aa)
	A0A0E0KN29	Vacuolar protein sorting-associated protein 41 homolog; Required for vacuolar assembly and vacuolar traffic. (947 aa)
	A0A0E0KN79	Vps54 domain-containing protein. (1088 aa)
	A0A0E0KN90	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (589 aa)
	A0A0E0KNE6	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (746 aa)
	A0A0E0KPQ1	Vacuolar protein sorting-associated protein 11 homolog; Involved in regulating membrane fusion at the tonoplast and the prevacuolar compartment. (940 aa)
	A0A0E0KPQ2	Vacuolar protein sorting-associated protein 11 homolog; Involved in regulating membrane fusion at the tonoplast and the prevacuolar compartment. (947 aa)
	A0A0E0KS23	YqaJ domain-containing protein. (255 aa)
	A0A0E0KT50	Syntaxin-18_N domain-containing protein. (316 aa)
	A0A0E0KVA3	Uncharacterized protein. (222 aa)
	A0A0E0KXH0	CNH domain-containing protein. (1852 aa)
	A0A0E0L1W8	Uncharacterized protein. (821 aa)
	A0A0E0L4Q8	Uncharacterized protein. (739 aa)
	A0A0E0L5N6	TMF_TATA_bd domain-containing protein. (1004 aa)
	A0A0E0L733	Uncharacterized protein. (679 aa)
	A0A0E0L7G7	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (602 aa)
	A0A0E0L8D6	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (325 aa)
	A0A0E0L8Z4	Uncharacterized protein; Belongs to the synaptobrevin family. (225 aa)
	A0A0E0L9H6	t-SNARE coiled-coil homology domain-containing protein. (279 aa)
	A0A0E0LD33	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (308 aa)
	A0A0E0LDK0	Uncharacterized protein. (520 aa)
	A0A0E0LEH7	Uncharacterized protein. (834 aa)
	A0A0E0LHG9	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (303 aa)
	A0A0E0LI50	Uncharacterized protein; Belongs to the synaptobrevin family. (310 aa)
	A0A0E0LIY9	Uncharacterized protein; Belongs to the synaptobrevin family. (239 aa)
	A0A0E0LKL6	Uncharacterized protein. (418 aa)
	A0A0E0LLF7	Uncharacterized protein. (219 aa)
	A0A0E0LLJ0	Uncharacterized protein. (91 aa)
	A0A0E0LLJ1	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (307 aa)
	A0A0E0LMM1	t-SNARE coiled-coil homology domain-containing protein. (121 aa)
	A0A0E0LNG7	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (202 aa)
	A0A0E0LPY9	Uncharacterized protein. (821 aa)
	A0A0E0LRV6	RING-type domain-containing protein. (966 aa)
	A0A0E0LSR4	HP domain-containing protein. (884 aa)
	A0A0E0LT78	t-SNARE coiled-coil homology domain-containing protein. (232 aa)
	A0A0E0LTB3	Uncharacterized protein. (289 aa)
	A0A0E0LV98	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. (218 aa)
	A0A0E0LVG4	Uncharacterized protein. (856 aa)
	A0A0E0LXY2	Uncharacterized protein; Belongs to the synaptobrevin family. (264 aa)
	A0A0E0LY12	t-SNARE coiled-coil homology domain-containing protein. (178 aa)
	A0A0E0LZ41	Uncharacterized protein. (240 aa)
	A0A0E0M190	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. (226 aa)
	A0A0E0M7G3	Uncharacterized protein. (86 aa)
	A0A0E0M917	Uncharacterized protein. (506 aa)
	A0A0E0M9F8	Remorin_C domain-containing protein. (147 aa)
	A0A0E0MAD3	Uncharacterized protein. (789 aa)
	A0A0E0MCP6	Uncharacterized protein. (206 aa)
	A0A0E0MCV2	t-SNARE coiled-coil homology domain-containing protein. (235 aa)
	A0A0E0MCW0	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (859 aa)
	A0A0E0MG61	Uncharacterized protein. (739 aa)
	A0A0E0MJW2	Uncharacterized protein. (142 aa)
	A0A0E0MKG9	t-SNARE coiled-coil homology domain-containing protein. (295 aa)
	A0A0E0MKX2	Sec39 domain-containing protein. (2511 aa)
	A0A0E0MLH3	Uncharacterized protein. (1069 aa)
	A0A0E0MN75	Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family. (582 aa)
	A0A0E0MN83	Uncharacterized protein. (907 aa)

Your Current Organism:

Oryza punctata

NCBI taxonomy Id: 4537
Other names: O. punctata, Oryza punctata Kotschy ex Steud.

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0JEV5	A0A0E0JG27	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.982
A0A0E0JEV5	A0A0E0JGH9	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.935
A0A0E0JEV5	A0A0E0JK43	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein.	0.857
A0A0E0JEV5	A0A0E0JK59	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	V-SNARE domain-containing protein.	0.959
A0A0E0JEV5	A0A0E0JM54	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Protein VACUOLELESS1; Required for vacuole biogenesis and vacuole enlargment in dividing and expanding cells. Involved in the docking or fusion of prevacuolar vesicles; Belongs to the VPS16 family.	0.464
A0A0E0JEV5	A0A0E0JN15	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	V-SNARE domain-containing protein.	0.959
A0A0E0JEV5	A0A0E0JQ43	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein.	0.971
A0A0E0JEV5	A0A0E0JQ45	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein.	0.971
A0A0E0JEV5	A0A0E0JRG1	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.994
A0A0E0JEV5	A0A0E0JSG3	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Vps53_N domain-containing protein.	0.522
A0A0E0JEV5	A0A0E0JTA1	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Homeobox domain-containing protein.	0.888
A0A0E0JEV5	A0A0E0JTZ5	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	t-SNARE coiled-coil homology domain-containing protein.	0.916
A0A0E0JEV5	A0A0E0JU07	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.993
A0A0E0JEV5	A0A0E0JUR7	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	t-SNARE coiled-coil homology domain-containing protein.	0.916
A0A0E0JEV5	A0A0E0JV02	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein.	0.991
A0A0E0JEV5	A0A0E0JZE3	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	t-SNARE coiled-coil homology domain-containing protein.	0.709
A0A0E0JEV5	A0A0E0JZF9	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.520
A0A0E0JEV5	A0A0E0JZH3	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Cog4 domain-containing protein.	0.950
A0A0E0JEV5	A0A0E0K0K9	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	t-SNARE coiled-coil homology domain-containing protein.	0.709
A0A0E0JEV5	A0A0E0K2X3	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein.	0.979