28 items (Oryza punctata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0JIR5	Uncharacterized protein. (648 aa)
	A0A0E0JJG7	Adaptin_N domain-containing protein. (941 aa)
	A0A0E0JJW2	Uncharacterized protein. (628 aa)
	A0A0E0JLD9	Beta-adaptin-like protein; Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules. (846 aa)
	A0A0E0JMY8	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family. (429 aa)
	A0A0E0JSR6	AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family. (1060 aa)
	A0A0E0JU94	AP-3 complex subunit beta; Belongs to the adaptor complexes large subunit family. (1090 aa)
	A0A0E0K6I1	AP-1 complex subunit gamma. (897 aa)
	A0A0E0KAV4	Clat_adaptor_s domain-containing protein. (396 aa)
	A0A0E0KCT8	AP-3 complex subunit beta; Belongs to the adaptor complexes large subunit family. (1073 aa)
	A0A0E0KJT2	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (145 aa)
	A0A0E0KKL0	Mg-protoporphyrin IX chelatase; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. Belongs to the Mg-chelatase subunits D/I family. (1708 aa)
	A0A0E0KNB1	Uncharacterized protein. (224 aa)
	A0A0E0KPW1	Uncharacterized protein. (1056 aa)
	A0A0E0KSB0	Uncharacterized protein. (903 aa)
	A0A0E0L1Z0	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family. (414 aa)
	A0A0E0L586	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family. (433 aa)
	A0A0E0L8C7	AP-1 complex subunit gamma. (854 aa)
	A0A0E0LII5	AAI domain-containing protein. (160 aa)
	A0A0E0LIJ2	AAI domain-containing protein. (156 aa)
	A0A0E0LNG5	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family. (426 aa)
	A0A0E0LUL9	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (143 aa)
	A0A0E0LWV2	Uncharacterized protein. (533 aa)
	A0A0E0M2V3	Uncharacterized protein. (529 aa)
	A0A0E0M6Z1	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (143 aa)
	A0A0E0MBH4	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1670 aa)
	A0A0E0MN42	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family. (622 aa)
	A0A0E0MNC0	Uncharacterized protein. (923 aa)

Your Current Organism:

Oryza punctata

NCBI taxonomy Id: 4537
Other names: O. punctata, Oryza punctata Kotschy ex Steud.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0JIR5	A0A0E0JJG7	Uncharacterized protein.	Adaptin_N domain-containing protein.	0.984
A0A0E0JIR5	A0A0E0JJW2	Uncharacterized protein.	Uncharacterized protein.	0.624
A0A0E0JIR5	A0A0E0JLD9	Uncharacterized protein.	Beta-adaptin-like protein; Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.	0.601
A0A0E0JIR5	A0A0E0JMY8	Uncharacterized protein.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.624
A0A0E0JIR5	A0A0E0JSR6	Uncharacterized protein.	AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.	0.853
A0A0E0JIR5	A0A0E0JU94	Uncharacterized protein.	AP-3 complex subunit beta; Belongs to the adaptor complexes large subunit family.	0.942
A0A0E0JIR5	A0A0E0K6I1	Uncharacterized protein.	AP-1 complex subunit gamma.	0.853
A0A0E0JIR5	A0A0E0KCT8	Uncharacterized protein.	AP-3 complex subunit beta; Belongs to the adaptor complexes large subunit family.	0.942
A0A0E0JIR5	A0A0E0KJT2	Uncharacterized protein.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.562
A0A0E0JIR5	A0A0E0KKL0	Uncharacterized protein.	Mg-protoporphyrin IX chelatase; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. Belongs to the Mg-chelatase subunits D/I family.	0.562
A0A0E0JIR5	A0A0E0KNB1	Uncharacterized protein.	Uncharacterized protein.	0.601
A0A0E0JIR5	A0A0E0KPW1	Uncharacterized protein.	Uncharacterized protein.	0.624
A0A0E0JIR5	A0A0E0L1Z0	Uncharacterized protein.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.976
A0A0E0JIR5	A0A0E0L586	Uncharacterized protein.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.624
A0A0E0JIR5	A0A0E0L8C7	Uncharacterized protein.	AP-1 complex subunit gamma.	0.853
A0A0E0JIR5	A0A0E0LII5	Uncharacterized protein.	AAI domain-containing protein.	0.516
A0A0E0JIR5	A0A0E0LIJ2	Uncharacterized protein.	AAI domain-containing protein.	0.516
A0A0E0JIR5	A0A0E0LNG5	Uncharacterized protein.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.624
A0A0E0JIR5	A0A0E0LUL9	Uncharacterized protein.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.562
A0A0E0JIR5	A0A0E0M6Z1	Uncharacterized protein.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.562