10 items (Oryza punctata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0JF56	Uncharacterized protein. (584 aa)
	A0A0E0JP59	Uncharacterized protein. (620 aa)
	A0A0E0JQ08	Uncharacterized protein. (599 aa)
	A0A0E0JTL1	Uncharacterized protein. (503 aa)
	A0A0E0KCZ9	Uncharacterized protein. (362 aa)
	A0A0E0KH70	Uncharacterized protein. (586 aa)
	A0A0E0KVS1	Uncharacterized protein. (397 aa)
	A0A0E0LPZ9	Uncharacterized protein. (318 aa)
	A0A0E0MJG7	Uncharacterized protein. (417 aa)
	A0A0E0MJQ4	Uncharacterized protein. (488 aa)

Your Current Organism:

Oryza punctata

NCBI taxonomy Id: 4537
Other names: O. punctata, Oryza punctata Kotschy ex Steud.

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0JF56	A0A0E0JP59	Uncharacterized protein.	Uncharacterized protein.	0.957
A0A0E0JF56	A0A0E0JQ08	Uncharacterized protein.	Uncharacterized protein.	0.932
A0A0E0JF56	A0A0E0JTL1	Uncharacterized protein.	Uncharacterized protein.	0.849
A0A0E0JF56	A0A0E0KCZ9	Uncharacterized protein.	Uncharacterized protein.	0.942
A0A0E0JF56	A0A0E0KH70	Uncharacterized protein.	Uncharacterized protein.	0.972
A0A0E0JF56	A0A0E0KVS1	Uncharacterized protein.	Uncharacterized protein.	0.971
A0A0E0JF56	A0A0E0LPZ9	Uncharacterized protein.	Uncharacterized protein.	0.916
A0A0E0JF56	A0A0E0MJG7	Uncharacterized protein.	Uncharacterized protein.	0.849
A0A0E0JF56	A0A0E0MJQ4	Uncharacterized protein.	Uncharacterized protein.	0.870
A0A0E0JP59	A0A0E0JF56	Uncharacterized protein.	Uncharacterized protein.	0.957
A0A0E0JP59	A0A0E0JQ08	Uncharacterized protein.	Uncharacterized protein.	0.898
A0A0E0JP59	A0A0E0JTL1	Uncharacterized protein.	Uncharacterized protein.	0.816
A0A0E0JP59	A0A0E0KCZ9	Uncharacterized protein.	Uncharacterized protein.	0.913
A0A0E0JP59	A0A0E0KH70	Uncharacterized protein.	Uncharacterized protein.	0.939
A0A0E0JP59	A0A0E0KVS1	Uncharacterized protein.	Uncharacterized protein.	0.884
A0A0E0JP59	A0A0E0LPZ9	Uncharacterized protein.	Uncharacterized protein.	0.866
A0A0E0JP59	A0A0E0MJQ4	Uncharacterized protein.	Uncharacterized protein.	0.831
A0A0E0JQ08	A0A0E0JF56	Uncharacterized protein.	Uncharacterized protein.	0.932
A0A0E0JQ08	A0A0E0JP59	Uncharacterized protein.	Uncharacterized protein.	0.898
A0A0E0JQ08	A0A0E0JTL1	Uncharacterized protein.	Uncharacterized protein.	0.876