11 items (Oryza punctata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0JHY8	Golgi apparatus membrane protein TVP23; Golgi membrane protein involved in vesicular trafficking. Belongs to the TVP23 family. (183 aa)
	A0A0E0JL22	Protein YIPF. (293 aa)
	A0A0E0JQI1	PRA1 family protein; May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments. Belongs to the PRA1 family. (222 aa)
	A0A0E0KCD1	Protein YIPF. (256 aa)
	PD2	YIF1b. (280 aa)
	A0A0E0KYR7	Golgi apparatus membrane protein TVP23; Golgi membrane protein involved in vesicular trafficking. Belongs to the TVP23 family. (190 aa)
	A0A0E0L309	Protein YIPF. (285 aa)
	A0A0E0LDK6	Uncharacterized protein. (267 aa)
	A0A0E0LZV7	Uncharacterized protein. (123 aa)
	A0A0E0MCT5	Uncharacterized protein. (512 aa)
	A0A0E0MJY7	Uncharacterized protein. (436 aa)

Your Current Organism:

Oryza punctata

NCBI taxonomy Id: 4537
Other names: O. punctata, Oryza punctata Kotschy ex Steud.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0E0JHY8	A0A0E0JL22	A0A0E0JHY8	A0A0E0JL22	Golgi apparatus membrane protein TVP23; Golgi membrane protein involved in vesicular trafficking. Belongs to the TVP23 family.	Protein YIPF.	0.867
A0A0E0JHY8	A0A0E0L309	A0A0E0JHY8	A0A0E0L309	Golgi apparatus membrane protein TVP23; Golgi membrane protein involved in vesicular trafficking. Belongs to the TVP23 family.	Protein YIPF.	0.781
A0A0E0JHY8	A0A0E0MCT5	A0A0E0JHY8	A0A0E0MCT5	Golgi apparatus membrane protein TVP23; Golgi membrane protein involved in vesicular trafficking. Belongs to the TVP23 family.	Uncharacterized protein.	0.744
A0A0E0JHY8	A0A0E0MJY7	A0A0E0JHY8	A0A0E0MJY7	Golgi apparatus membrane protein TVP23; Golgi membrane protein involved in vesicular trafficking. Belongs to the TVP23 family.	Uncharacterized protein.	0.744
A0A0E0JL22	A0A0E0JHY8	A0A0E0JL22	A0A0E0JHY8	Protein YIPF.	Golgi apparatus membrane protein TVP23; Golgi membrane protein involved in vesicular trafficking. Belongs to the TVP23 family.	0.867
A0A0E0JL22	A0A0E0KCD1	A0A0E0JL22	A0A0E0KCD1	Protein YIPF.	Protein YIPF.	0.942
A0A0E0JL22	A0A0E0KYR7	A0A0E0JL22	A0A0E0KYR7	Protein YIPF.	Golgi apparatus membrane protein TVP23; Golgi membrane protein involved in vesicular trafficking. Belongs to the TVP23 family.	0.867
A0A0E0JL22	A0A0E0L309	A0A0E0JL22	A0A0E0L309	Protein YIPF.	Protein YIPF.	0.908
A0A0E0JL22	A0A0E0LDK6	A0A0E0JL22	A0A0E0LDK6	Protein YIPF.	Uncharacterized protein.	0.504
A0A0E0JL22	A0A0E0LZV7	A0A0E0JL22	A0A0E0LZV7	Protein YIPF.	Uncharacterized protein.	0.428
A0A0E0JL22	A0A0E0MCT5	A0A0E0JL22	A0A0E0MCT5	Protein YIPF.	Uncharacterized protein.	0.908
A0A0E0JL22	A0A0E0MJY7	A0A0E0JL22	A0A0E0MJY7	Protein YIPF.	Uncharacterized protein.	0.908
A0A0E0JL22	PD2	A0A0E0JL22	A0A0E0KMN6	Protein YIPF.	YIF1b.	0.504
A0A0E0JQI1	A0A0E0KCD1	A0A0E0JQI1	A0A0E0KCD1	PRA1 family protein; May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments. Belongs to the PRA1 family.	Protein YIPF.	0.455
A0A0E0JQI1	A0A0E0LDK6	A0A0E0JQI1	A0A0E0LDK6	PRA1 family protein; May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments. Belongs to the PRA1 family.	Uncharacterized protein.	0.462
A0A0E0JQI1	PD2	A0A0E0JQI1	A0A0E0KMN6	PRA1 family protein; May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments. Belongs to the PRA1 family.	YIF1b.	0.462
A0A0E0KCD1	A0A0E0JL22	A0A0E0KCD1	A0A0E0JL22	Protein YIPF.	Protein YIPF.	0.942
A0A0E0KCD1	A0A0E0JQI1	A0A0E0KCD1	A0A0E0JQI1	Protein YIPF.	PRA1 family protein; May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments. Belongs to the PRA1 family.	0.455
A0A0E0KCD1	A0A0E0L309	A0A0E0KCD1	A0A0E0L309	Protein YIPF.	Protein YIPF.	0.564
A0A0E0KCD1	A0A0E0LDK6	A0A0E0KCD1	A0A0E0LDK6	Protein YIPF.	Uncharacterized protein.	0.936